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Protein
Submitted name:

AP-2 Transcription Factor family

Gene

aptf-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

  • anatomical structure development Source: GO_Central
  • positive regulation of transcription from RNA polymerase II promoter Source: WormBase
  • regulation of cell proliferation Source: GO_Central
  • sleep Source: WormBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
AP-2 Transcription Factor familyImported
Gene namesi
Name:aptf-1Imported
ORF Names:CELE_K06A1.1Imported, K06A1.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiK06A1.1; CE35990; WBGene00019424; aptf-1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ09585.

Interactioni

Protein-protein interaction databases

STRINGi6239.K06A1.1.

Structurei

3D structure databases

ProteinModelPortaliQ09585.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini154 – 350197TF_AP-2InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG3811. Eukaryota.
ENOG410XR9E. LUCA.
GeneTreeiENSGT00550000074577.
HOGENOMiHOG000016929.
InParanoidiQ09585.
KOiK09180.
OMAiSQCDEED.
OrthoDBiEOG7HHWS1.
PhylomeDBiQ09585.

Family and domain databases

InterProiIPR004979. TF_AP2.
IPR013854. TF_AP2_C.
[Graphical view]
PANTHERiPTHR10812. PTHR10812. 2 hits.
PfamiPF03299. TF_AP-2. 1 hit.
[Graphical view]
PRINTSiPR01748. AP2TNSCPFCT.

Sequencei

Sequence statusi: Complete.

Q09585-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFNRKLMECS DDEFVRGSQC DEEDEEEQQR QSSQRPPFYE NMRTFAPSHM
60 70 80 90 100
HISCHYDIPY PPHLIQPPVC GVSTFTYARE FPVSNSQQFF NVTPPQQQQQ
110 120 130 140 150
QGTGGSGEED YCIPKSEDRD HSSNYSQVAT KQDRPFVFFA SDCQSPLEIV
160 170 180 190 200
GEVYCTVPGR TSLLSSTTKY RVTVAEIQRR ISPPECLNAS LLGGILRKAK
210 220 230 240 250
SKDGGKTLRD SLKKLGLTLP AGRRKQANVT AWTALVEEEA IHMAKEFALV
260 270 280 290 300
CEKEFHSREI GIYLTKTSLA IDPDVVKRRT ALEMSRKVVG ELAELLSCDR
310 320 330 340 350
TPLTPYFPRN MLPIDPSVQQ HLSHFTLMTH GFGNVAMSAV LESVKLMIDE
360
SIKYIDRCCS QNVWR
Length:365
Mass (Da):41,328
Last modified:March 1, 2004 - v2
Checksum:i8E25A54BA9953E8A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD72609.1.
PIRiT34333.
RefSeqiNP_495300.2. NM_062899.2.
UniGeneiCel.14799.

Genome annotation databases

EnsemblMetazoaiK06A1.1; K06A1.1; WBGene00019424.
GeneIDi187043.
KEGGicel:CELE_K06A1.1.
UCSCiK06A1.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD72609.1.
PIRiT34333.
RefSeqiNP_495300.2. NM_062899.2.
UniGeneiCel.14799.

3D structure databases

ProteinModelPortaliQ09585.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.K06A1.1.

Proteomic databases

PaxDbiQ09585.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiK06A1.1; K06A1.1; WBGene00019424.
GeneIDi187043.
KEGGicel:CELE_K06A1.1.
UCSCiK06A1.1. c. elegans.

Organism-specific databases

CTDi187043.
WormBaseiK06A1.1; CE35990; WBGene00019424; aptf-1.

Phylogenomic databases

eggNOGiKOG3811. Eukaryota.
ENOG410XR9E. LUCA.
GeneTreeiENSGT00550000074577.
HOGENOMiHOG000016929.
InParanoidiQ09585.
KOiK09180.
OMAiSQCDEED.
OrthoDBiEOG7HHWS1.
PhylomeDBiQ09585.

Family and domain databases

InterProiIPR004979. TF_AP2.
IPR013854. TF_AP2_C.
[Graphical view]
PANTHERiPTHR10812. PTHR10812. 2 hits.
PfamiPF03299. TF_AP-2. 1 hit.
[Graphical view]
PRINTSiPR01748. AP2TNSCPFCT.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ09585_CAEEL
AccessioniPrimary (citable) accession number: Q09585
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: March 1, 2004
Last modified: July 6, 2016
This is version 102 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.