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Protein

60S ribosomal protein L10

Gene

rpl-10

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L10
Alternative name(s):
QM protein homolog
Gene namesi
Name:rpl-10
ORF Names:F10B5.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF10B5.1; CE01543; WBGene00004421; rpl-10.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001471121 – 21460S ribosomal protein L10Add BLAST214

Proteomic databases

EPDiQ09533.
PaxDbiQ09533.
PeptideAtlasiQ09533.
PRIDEiQ09533.

PTM databases

iPTMnetiQ09533.

Expressioni

Gene expression databases

BgeeiWBGene00004421.

Interactioni

Subunit structurei

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (28S, 5.8S and 5S) (By similarity).By similarity

Protein-protein interaction databases

BioGridi39640. 2 interactors.
DIPiDIP-24839N.
MINTiMINT-1098976.
STRINGi6239.F10B5.1.2.

Structurei

3D structure databases

ProteinModelPortaliQ09533.
SMRiQ09533.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0857. Eukaryota.
COG0197. LUCA.
GeneTreeiENSGT00390000003897.
HOGENOMiHOG000223754.
InParanoidiQ09533.
KOiK02866.
OMAiPYTRKEY.
OrthoDBiEOG091G0H9M.
PhylomeDBiQ09533.

Family and domain databases

CDDicd01433. Ribosomal_L16_L10e. 1 hit.
Gene3Di3.90.1170.10. 1 hit.
InterProiView protein in InterPro
IPR001197. Ribosomal_L10e.
IPR016180. Ribosomal_L10e/L16.
IPR018255. Ribosomal_L10e_CS.
PANTHERiPTHR11726. PTHR11726. 1 hit.
PfamiView protein in Pfam
PF00252. Ribosomal_L16. 1 hit.
PIRSFiPIRSF005590. Ribosomal_L10. 1 hit.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR00279. uL16_euk_arch. 1 hit.
PROSITEiView protein in PROSITE
PS01257. RIBOSOMAL_L10E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q09533-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRRPARCYR YIKNKPYPKS RFCRGVPDAK IRIFDLGNKR ANVDTFPACV
60 70 80 90 100
HMMSNEREHL SSEALEAARI CANKYMVKNC GKDGFHLRVR KHPFHVTRIN
110 120 130 140 150
KMLSCAGADR LQTGMRGAYG KPQGLVARVD IGDILFSMRI KEGNVKHAIE
160 170 180 190 200
AFRRAKFKFP GRQIIVSSRK WGFTKWDRED YERMRAEGRL RSDGVGVQLQ
210
REHGPLTKWI ENPI
Length:214
Mass (Da):24,749
Last modified:November 1, 1995 - v1
Checksum:iBC12D2B64BD31AAC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z48334 Genomic DNA. Translation: CAA88308.1.
PIRiT20688.
RefSeqiNP_495707.1. NM_063306.5.
UniGeneiCel.23306.

Genome annotation databases

EnsemblMetazoaiF10B5.1.1; F10B5.1.1; WBGene00004421.
F10B5.1.2; F10B5.1.2; WBGene00004421.
GeneIDi174311.
KEGGicel:CELE_F10B5.1.
UCSCiF10B5.1.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z48334 Genomic DNA. Translation: CAA88308.1.
PIRiT20688.
RefSeqiNP_495707.1. NM_063306.5.
UniGeneiCel.23306.

3D structure databases

ProteinModelPortaliQ09533.
SMRiQ09533.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi39640. 2 interactors.
DIPiDIP-24839N.
MINTiMINT-1098976.
STRINGi6239.F10B5.1.2.

PTM databases

iPTMnetiQ09533.

Proteomic databases

EPDiQ09533.
PaxDbiQ09533.
PeptideAtlasiQ09533.
PRIDEiQ09533.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF10B5.1.1; F10B5.1.1; WBGene00004421.
F10B5.1.2; F10B5.1.2; WBGene00004421.
GeneIDi174311.
KEGGicel:CELE_F10B5.1.
UCSCiF10B5.1.1. c. elegans.

Organism-specific databases

CTDi174311.
WormBaseiF10B5.1; CE01543; WBGene00004421; rpl-10.

Phylogenomic databases

eggNOGiKOG0857. Eukaryota.
COG0197. LUCA.
GeneTreeiENSGT00390000003897.
HOGENOMiHOG000223754.
InParanoidiQ09533.
KOiK02866.
OMAiPYTRKEY.
OrthoDBiEOG091G0H9M.
PhylomeDBiQ09533.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:Q09533.

Gene expression databases

BgeeiWBGene00004421.

Family and domain databases

CDDicd01433. Ribosomal_L16_L10e. 1 hit.
Gene3Di3.90.1170.10. 1 hit.
InterProiView protein in InterPro
IPR001197. Ribosomal_L10e.
IPR016180. Ribosomal_L10e/L16.
IPR018255. Ribosomal_L10e_CS.
PANTHERiPTHR11726. PTHR11726. 1 hit.
PfamiView protein in Pfam
PF00252. Ribosomal_L16. 1 hit.
PIRSFiPIRSF005590. Ribosomal_L10. 1 hit.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR00279. uL16_euk_arch. 1 hit.
PROSITEiView protein in PROSITE
PS01257. RIBOSOMAL_L10E. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL10_CAEEL
AccessioniPrimary (citable) accession number: Q09533
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: June 7, 2017
This is version 115 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.