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Protein

SWI/SNF nucleosome remodeling complex component

Gene

C08B11.3

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi623 – 69775RFX-type winged-helixPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
SWI/SNF nucleosome remodeling complex component
Alternative name(s):
ARID domain-containing protein C08B11.3
Gene namesi
ORF Names:C08B11.3
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiC08B11.3; CE01473; WBGene00007433; swsn-7.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12441244SWI/SNF nucleosome remodeling complex componentPRO_0000200600Add
BLAST

Proteomic databases

EPDiQ09441.
PaxDbiQ09441.

PTM databases

iPTMnetiQ09441.

Expressioni

Gene expression databases

BgeeiWBGene00007433.

Interactioni

Protein-protein interaction databases

STRINGi6239.C08B11.3.1.

Structurei

3D structure databases

ProteinModelPortaliQ09441.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini24 – 11693ARIDPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ARID domain.PROSITE-ProRule annotation
Contains 1 RFX-type winged-helix DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG2312. Eukaryota.
ENOG410XT3H. LUCA.
GeneTreeiENSGT00390000016138.
HOGENOMiHOG000020024.
InParanoidiQ09441.
KOiK11765.
OMAiSCLILRN.
OrthoDBiEOG091G169Y.

Family and domain databases

Gene3Di1.10.150.60. 1 hit.
1.25.10.10. 3 hits.
InterProiIPR001606. ARID_dom.
IPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR003150. DNA-bd_RFX.
IPR007087. Znf_C2H2.
[Graphical view]
PfamiPF01388. ARID. 1 hit.
[Graphical view]
SMARTiSM00501. BRIGHT. 1 hit.
[Graphical view]
SUPFAMiSSF46774. SSF46774. 1 hit.
SSF48371. SSF48371. 1 hit.
PROSITEiPS51011. ARID. 1 hit.
PS51526. RFX_DBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q09441-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESRKRKSEL EHYIDKLTDP PEKQRKMAEF YNSLRMFYKR RWNATLKLPH
60 70 80 90 100
VQGVEVNLYR LYDTVMALGG WQKVAASDKW SDIAEMFGCK DDILCGDHAI
110 120 130 140 150
KIIYMRYLSK FEQVETIGDV DDYVDNEMSR SRGRNATSFF ATNECPISNN
160 170 180 190 200
RMVQEYQHRD ERGQIINEPD YARLTKSLIS GLPNEIDFAM NVCMLLSHAG
210 220 230 240 250
PKQLRICHAP TLLTLLVAHT GVYDEDDETM ADMGKEWKRT TKHNFRDFWA
260 270 280 290 300
SSGVPLDMLM TFLDREIEAE YIDEDDQFFT GVSETFNVKD SRCWRLNQVT
310 320 330 340 350
TIIRNLSFEP ANRVTIVKTW PVMKFLIMCA SCKWSPLYVA ALDALSNLAT
360 370 380 390 400
DIDLTDKTLV YISQHAILRI ITDGIFSLDK FKLVRSLEIL TGLCGFEGNE
410 420 430 440 450
AIICDWLNSA TIAHIFEVVG VKDIMMCVYT LECLYQISEM GDTACDLISE
460 470 480 490 500
SPKAIQQLVS MATLEAVSFG PAGLAGMKVV EYQPSFTQGS NQQQNPHHSQ
510 520 530 540 550
GGHQLGHSNV RMGGLNHNQH HQQIGPPGAP GAAPMTVRQV IQNNLALQQV
560 570 580 590 600
QRENLNREQY STQSSQPHPP HTNVPPSPSI LAHHSSGLVQ QNGMKFDRRT
610 620 630 640 650
GNLPVRPIAP STNSGESQLE QLTEKWIRQN CVFEPAMSTP RGELYAAYVD
660 670 680 690 700
DLRNLYHSMS GSLAMFSGVM KNLYPDVNFR MAQNGIMIVA QGIRLIRPHR
710 720 730 740 750
LAPAASQSAS ESHPLMKKML TSEPKEENGV LINGHAVQES GAERIIKTEP
760 770 780 790 800
IRTDEPSVLI ESQEQSVPKK QNDINGEETD EVELNSKIVT PEKKSITNGT
810 820 830 840 850
VEVCQEPIQA SKLFDENYAN QIEGSEVSIE IREQFVNDTD NVKLESEKIN
860 870 880 890 900
GIICNGNSKV KKESMASRAA HIVAVAAACN GDLERMNVVS NGNDIEKEIE
910 920 930 940 950
KETEKVEEET NEEKNKEVVE TEVVDDAQES EKRKCVPPSS NPTDYMCDWD
960 970 980 990 1000
CCSIYYASPS HVLKHLSEEH VAEELRLLCR WNGCADPTPR NRWSLITHIQ
1010 1020 1030 1040 1050
DSHCNEAQLK AASQKRKEGG GIAPVRGAPR AEVISRDINN HPGYAKNAAF
1060 1070 1080 1090 1100
DAIRRHAFNF LSRELTDEAE GPVTKSIRLT SCLILRNLAR YSAEGRQKLR
1110 1120 1130 1140 1150
RHESHICWLA LSRLESAHAL SQLLSELHQA PAAEEEQQKM LSEVPSSASL
1160 1170 1180 1190 1200
SSMAGSSSQL PTVPDSPTSS VASAPMKEST SVSNKPTVHI NRMLNFSSLN
1210 1220 1230 1240
EKTPTSPQFT AGSSPHRHQP IQQHIPSQPS PLVQTTPVRA GAGI
Length:1,244
Mass (Da):139,117
Last modified:November 1, 1995 - v1
Checksum:i50FB3E4C13F73E06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46676 Genomic DNA. Translation: CAA86663.1.
PIRiT19068.
RefSeqiNP_495679.1. NM_063278.4.
UniGeneiCel.5858.

Genome annotation databases

EnsemblMetazoaiC08B11.3; C08B11.3; WBGene00007433.
GeneIDi174286.
KEGGicel:CELE_C08B11.3.
UCSCiC08B11.3. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46676 Genomic DNA. Translation: CAA86663.1.
PIRiT19068.
RefSeqiNP_495679.1. NM_063278.4.
UniGeneiCel.5858.

3D structure databases

ProteinModelPortaliQ09441.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.C08B11.3.1.

PTM databases

iPTMnetiQ09441.

Proteomic databases

EPDiQ09441.
PaxDbiQ09441.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC08B11.3; C08B11.3; WBGene00007433.
GeneIDi174286.
KEGGicel:CELE_C08B11.3.
UCSCiC08B11.3. c. elegans.

Organism-specific databases

CTDi174286.
WormBaseiC08B11.3; CE01473; WBGene00007433; swsn-7.

Phylogenomic databases

eggNOGiKOG2312. Eukaryota.
ENOG410XT3H. LUCA.
GeneTreeiENSGT00390000016138.
HOGENOMiHOG000020024.
InParanoidiQ09441.
KOiK11765.
OMAiSCLILRN.
OrthoDBiEOG091G169Y.

Miscellaneous databases

PROiQ09441.

Gene expression databases

BgeeiWBGene00007433.

Family and domain databases

Gene3Di1.10.150.60. 1 hit.
1.25.10.10. 3 hits.
InterProiIPR001606. ARID_dom.
IPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR003150. DNA-bd_RFX.
IPR007087. Znf_C2H2.
[Graphical view]
PfamiPF01388. ARID. 1 hit.
[Graphical view]
SMARTiSM00501. BRIGHT. 1 hit.
[Graphical view]
SUPFAMiSSF46774. SSF46774. 1 hit.
SSF48371. SSF48371. 1 hit.
PROSITEiPS51011. ARID. 1 hit.
PS51526. RFX_DBD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSWSN7_CAEEL
AccessioniPrimary (citable) accession number: Q09441
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: September 7, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.