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Protein

Purple acid phosphatase

Gene

PAP

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

A phosphate monoester + H2O = an alcohol + phosphate.2 Publications

Cofactori

Protein has several cofactor binding sites:

Absorptioni

Abs(max)=550 nm1 Publication

Kineticsi

  1. KM=8 µM for p-NPP (at pH 5.5 and 25 degrees Celsius)1 Publication
  2. KM=5 µM for ATP (at pH 5.5 and 25 degrees Celsius)1 Publication
  3. KM=6 µM for ADP (at pH 5.5 and 25 degrees Celsius)1 Publication
  4. KM=9 µM for AMP (at pH 5.5 and 25 degrees Celsius)1 Publication
  5. KM=9 µM for pyrophosphate (at pH 5.5 and 25 degrees Celsius)1 Publication
  6. KM=30 µM for beta-glycerophosphate (at pH 5.5 and 25 degrees Celsius)1 Publication

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi162 – 1621IronBy similarity
    Metal bindingi191 – 1911IronBy similarity
    Metal bindingi191 – 1911ZincBy similarity
    Metal bindingi194 – 1941IronBy similarity
    Metal bindingi228 – 2281ZincBy similarity
    Binding sitei228 – 2281SubstrateBy similarity
    Metal bindingi313 – 3131ZincBy similarity
    Active sitei323 – 3231Proton donorBy similarity
    Metal bindingi350 – 3501ZincBy similarity
    Metal bindingi352 – 3521IronBy similarity

    GO - Molecular functioni

    • acid phosphatase activity Source: UniProtKB
    • manganese ion binding Source: UniProtKB
    • metal ion binding Source: UniProtKB

    GO - Biological processi

    • dephosphorylation Source: GOC
    Complete GO annotation...

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Ligandi

    Iron, Metal-binding, Zinc

    Enzyme and pathway databases

    BioCyciMetaCyc:MONOMER-15155.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Purple acid phosphatase (EC:3.1.3.2)
    Alternative name(s):
    Zinc(II) purple acid phosphatase
    Gene namesi
    Name:PAPImported
    OrganismiGlycine max (Soybean) (Glycine hispida)
    Taxonomic identifieri3847 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
    ProteomesiUP000008827 Componenti: Unplaced

    Subcellular locationi

    GO - Cellular componenti

    • extracellular space Source: UniProtKB
    Complete GO annotation...

    Keywords - Cellular componenti

    Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 30301 PublicationAdd
    BLAST
    Chaini31 – 464434Purple acid phosphatase1 PublicationPRO_0000043380Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi108 – 1081N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi136 – 1361N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi170 – 1701N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi301 – 3011N-linked (GlcNAc...)Sequence Analysis
    Disulfide bondi372 – 372InterchainBy similarity
    Glycosylationi398 – 3981N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi423 – 4231N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Disulfide bond, Glycoprotein

    Interactioni

    Subunit structurei

    Homodimer; disulfide-linked.By similarity1 Publication

    Protein-protein interaction databases

    STRINGi3847.GLYMA12G01000.1.

    Structurei

    3D structure databases

    ProteinModelPortaliQ09131.
    SMRiQ09131. Positions 37-459.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni350 – 3523Substrate bindingBy similarity

    Sequence similaritiesi

    Keywords - Domaini

    Signal

    Phylogenomic databases

    InParanoidiQ09131.

    Family and domain databases

    Gene3Di2.60.40.380. 1 hit.
    3.60.21.10. 1 hit.
    InterProiIPR004843. Calcineurin-like_PHP_apaH.
    IPR029052. Metallo-depent_PP-like.
    IPR008963. Purple_acid_Pase-like_N.
    IPR015914. Purple_acid_Pase_N.
    IPR025733. Purple_acid_PPase_C_dom.
    [Graphical view]
    PfamiPF00149. Metallophos. 1 hit.
    PF14008. Metallophos_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF49363. SSF49363. 1 hit.
    SSF56300. SSF56300. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q09131-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MGVVEGLLAL ALVLSACVMC NGGSSSPFIR KVEKTVDMPL DSDVFAVPPG
    60 70 80 90 100
    YNAPQQVHIT QGDLVGKAVI VSWVTVDEPG SSEVHYWSEN SDKKKIAEGK
    110 120 130 140 150
    LVTYRFFNYS SGFIHHTTIR NLEYKTKYYY EVGLGNTTRQ FWFVTPPEIG
    160 170 180 190 200
    PDVPYTFGLI GDLGQSFDSN KTLSHYELNP RKGQTVLFVG DLSYADNYPN
    210 220 230 240 250
    HDNIRWDSWG RFTERSVAYQ PWIWTAGNHE NHFAPEIGET VPFKPYTHRY
    260 270 280 290 300
    HVPYKASQST SPFWYSIKRA SAHIIVLASY SAYGKYTPQY KWLEKELPKV
    310 320 330 340 350
    NRTETPWLIV LMHSPWYNSY NYHYMEGETM RVMYEPWFVQ YKVDVVFAGH
    360 370 380 390 400
    VHAYERSERV SNVAYNIVNG LCAPVNDKSA PVYITIGDGG TLEGLATNMT
    410 420 430 440 450
    EPQPKYSAFR EASFGHAIFD ITNRTHAHYS WHRNQDGVAV EADSLWSFNR
    460
    YWHPVDDSTA HVSH
    Length:464
    Mass (Da):53,027
    Last modified:December 6, 2005 - v2
    Checksum:i83BBAD593BEB01F5
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti35 – 351T → A AA sequence (PubMed:16668896).Curated
    Sequence conflicti47 – 471V → R AA sequence (PubMed:16668896).Curated

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    AF200824 mRNA. Translation: AAF19820.1.
    PIRiB59200.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    AF200824 mRNA. Translation: AAF19820.1.
    PIRiB59200.

    3D structure databases

    ProteinModelPortaliQ09131.
    SMRiQ09131. Positions 37-459.
    ModBaseiSearch...
    MobiDBiSearch...

    Protein-protein interaction databases

    STRINGi3847.GLYMA12G01000.1.

    Protocols and materials databases

    Structural Biology KnowledgebaseSearch...

    Phylogenomic databases

    InParanoidiQ09131.

    Enzyme and pathway databases

    BioCyciMetaCyc:MONOMER-15155.

    Family and domain databases

    Gene3Di2.60.40.380. 1 hit.
    3.60.21.10. 1 hit.
    InterProiIPR004843. Calcineurin-like_PHP_apaH.
    IPR029052. Metallo-depent_PP-like.
    IPR008963. Purple_acid_Pase-like_N.
    IPR015914. Purple_acid_Pase_N.
    IPR025733. Purple_acid_PPase_C_dom.
    [Graphical view]
    PfamiPF00149. Metallophos. 1 hit.
    PF14008. Metallophos_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF49363. SSF49363. 1 hit.
    SSF56300. SSF56300. 1 hit.
    ProtoNetiSearch...

    Publicationsi

    1. "Binuclear metal centers in plant purple acid phosphatases: Fe-Mn in sweet potato and Fe-Zn in soybean."
      Schenk G., Ge Y., Carrington L.E., Wynne C.J., Searle I.R., Carroll B.J., Hamilton S., de Jersey J.
      Arch. Biochem. Biophys. 370:183-189(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], CATALYTIC ACTIVITY, COFACTOR, BIOPHYSICOCHEMICAL PROPERTIES.
      Strain: cv. Provar.
    2. "Purification and characterization of a secreted purple phosphatase from soybean suspension cultures."
      Lebansky B.R., McKnight T.D., Griffing L.R.
      Plant Physiol. 99:391-395(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 31-47, CATALYTIC ACTIVITY, COFACTOR, SUBUNIT, SUBCELLULAR LOCATION.

    Entry informationi

    Entry nameiPPAF_SOYBN
    AccessioniPrimary (citable) accession number: Q09131
    Secondary accession number(s): Q9SE01
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 6, 2005
    Last sequence update: December 6, 2005
    Last modified: June 24, 2015
    This is version 70 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3

    Similar proteinsi

    Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
    100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
    90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
    50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.