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Protein

RNA-binding protein rnp24

Gene

rnp24

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein rnp24
Gene namesi
Name:rnp24
ORF Names:SPAC3G6.04
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC3G6.04
PomBaseiSPAC3G6.04 rnp24

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000818081 – 369RNA-binding protein rnp24Add BLAST369

Proteomic databases

MaxQBiQ09100
PaxDbiQ09100
PRIDEiQ09100

PTM databases

iPTMnetiQ09100

Interactioni

Protein-protein interaction databases

BioGridi27940512 interactors.
STRINGi4896.SPAC3G6.04.1

Structurei

3D structure databases

ProteinModelPortaliQ09100
SMRiQ09100
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini105 – 206RRM 1PROSITE-ProRule annotationAdd BLAST102
Domaini228 – 310RRM 2PROSITE-ProRule annotationAdd BLAST83

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000193653
InParanoidiQ09100
OMAiMEYGEDR
OrthoDBiEOG092C3SCB
PhylomeDBiQ09100

Family and domain databases

CDDicd12396 RRM1_Nop13p_fungi, 1 hit
cd12397 RRM2_Nop13p_fungi, 1 hit
Gene3Di3.30.70.3302 hits
InterProiView protein in InterPro
IPR034225 Nop13/Rnp24_RRM1
IPR034226 Nop13/Rnp24_RRM2
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 2 hits
SMARTiView protein in SMART
SM00360 RRM, 2 hits
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 2 hits

Sequencei

Sequence statusi: Complete.

Q09100-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEPIQKMDSL NNKEGQPDKK RKKHESEKEG ENEVLEIDVT KPVPPSKKLM
60 70 80 90 100
RKLRKAGKID KDGNWTPEAL EEAKKKEEKR LKRLDAKYGR KEEGESQEES
110 120 130 140 150
KRSPWGIWVG NLSFHTTKEI LTDFFVRETS EMIKEVSEEN IKPITTEQIT
160 170 180 190 200
RIHMPMSKEK RFQNKGFAYV DFATEDALKL ALQCSEKALN GRNILIKSNT
210 220 230 240 250
DFSGRPSKPA NTLSKTASIQ SSKKEPSSIL FVGNLDFETT DADLKEHFGQ
260 270 280 290 300
VGQIRRVRLM TFEDTGKCKG FGFVDFPDID TCMKAMELGH NSWRLEYGED
310 320 330 340 350
RSKRMRNKSP MARSGRFNDA ESLGQEDKPN FKRARKIDPR SVRPGAALAK
360
AQRSSAAIVE PAGQKIKFD
Length:369
Mass (Da):42,074
Last modified:April 27, 2001 - v2
Checksum:iB595AB826279BC79
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti343 – 369RPGAA…KIKFD → VPVQH in AAA98604 (PubMed:8598051).CuratedAdd BLAST27

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U24430 Genomic DNA Translation: AAA98604.1
CU329670 Genomic DNA Translation: CAB16280.1
AB027862 Genomic DNA Translation: BAA87166.1
PIRiT38723
RefSeqiNP_594970.1, NM_001020401.2

Genome annotation databases

EnsemblFungiiSPAC3G6.04.1; SPAC3G6.04.1:pep; SPAC3G6.04
GeneIDi2542965
KEGGispo:SPAC3G6.04

Similar proteinsi

Entry informationi

Entry nameiRNP24_SCHPO
AccessioniPrimary (citable) accession number: Q09100
Secondary accession number(s): O74303, Q9UU22
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: April 27, 2001
Last modified: March 28, 2018
This is version 124 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome