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Protein

RNA-binding protein rnp24

Gene

rnp24

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein rnp24
Gene namesi
Name:rnp24
ORF Names:SPAC3G6.04
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC3G6.04.
PomBaseiSPAC3G6.04. rnp24.

Subcellular locationi

GO - Cellular componenti

  • nucleolus Source: PomBase
  • nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 369369RNA-binding protein rnp24PRO_0000081808Add
BLAST

Proteomic databases

MaxQBiQ09100.

Interactioni

Protein-protein interaction databases

BioGridi279405. 12 interactions.
MINTiMINT-4693568.

Structurei

3D structure databases

ProteinModelPortaliQ09100.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini105 – 206102RRM 1PROSITE-ProRule annotationAdd
BLAST
Domaini228 – 31083RRM 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 2 RRM (RNA recognition motif) domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000193653.
InParanoidiQ09100.
OMAiVRETSEM.
OrthoDBiEOG706125.
PhylomeDBiQ09100.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q09100-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEPIQKMDSL NNKEGQPDKK RKKHESEKEG ENEVLEIDVT KPVPPSKKLM
60 70 80 90 100
RKLRKAGKID KDGNWTPEAL EEAKKKEEKR LKRLDAKYGR KEEGESQEES
110 120 130 140 150
KRSPWGIWVG NLSFHTTKEI LTDFFVRETS EMIKEVSEEN IKPITTEQIT
160 170 180 190 200
RIHMPMSKEK RFQNKGFAYV DFATEDALKL ALQCSEKALN GRNILIKSNT
210 220 230 240 250
DFSGRPSKPA NTLSKTASIQ SSKKEPSSIL FVGNLDFETT DADLKEHFGQ
260 270 280 290 300
VGQIRRVRLM TFEDTGKCKG FGFVDFPDID TCMKAMELGH NSWRLEYGED
310 320 330 340 350
RSKRMRNKSP MARSGRFNDA ESLGQEDKPN FKRARKIDPR SVRPGAALAK
360
AQRSSAAIVE PAGQKIKFD
Length:369
Mass (Da):42,074
Last modified:April 27, 2001 - v2
Checksum:iB595AB826279BC79
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti343 – 36927RPGAA…KIKFD → VPVQH in AAA98604 (PubMed:8598051).CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U24430 Genomic DNA. Translation: AAA98604.1.
CU329670 Genomic DNA. Translation: CAB16280.1.
AB027862 Genomic DNA. Translation: BAA87166.1.
PIRiT38723.
RefSeqiNP_594970.1. NM_001020401.2.

Genome annotation databases

EnsemblFungiiSPAC3G6.04.1; SPAC3G6.04.1:pep; SPAC3G6.04.
GeneIDi2542965.
KEGGispo:SPAC3G6.04.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U24430 Genomic DNA. Translation: AAA98604.1.
CU329670 Genomic DNA. Translation: CAB16280.1.
AB027862 Genomic DNA. Translation: BAA87166.1.
PIRiT38723.
RefSeqiNP_594970.1. NM_001020401.2.

3D structure databases

ProteinModelPortaliQ09100.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi279405. 12 interactions.
MINTiMINT-4693568.

Proteomic databases

MaxQBiQ09100.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC3G6.04.1; SPAC3G6.04.1:pep; SPAC3G6.04.
GeneIDi2542965.
KEGGispo:SPAC3G6.04.

Organism-specific databases

EuPathDBiFungiDB:SPAC3G6.04.
PomBaseiSPAC3G6.04. rnp24.

Phylogenomic databases

HOGENOMiHOG000193653.
InParanoidiQ09100.
OMAiVRETSEM.
OrthoDBiEOG706125.
PhylomeDBiQ09100.

Miscellaneous databases

NextBioi20804000.
PROiQ09100.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular analysis of a novel Schizosaccharomyces pombe gene containing two RNP consensus-sequence RNA-binding domains."
    Vanhoy R.W., Wise J.A.
    Curr. Genet. 29:307-315(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  3. "Large-scale screening of intracellular protein localization in living fission yeast cells by the use of a GFP-fusion genomic DNA library."
    Ding D.-Q., Tomita Y., Yamamoto A., Chikashige Y., Haraguchi T., Hiraoka Y.
    Genes Cells 5:169-190(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] OF 1-196, SUBCELLULAR LOCATION.
    Strain: ATCC 38364 / 968.

Entry informationi

Entry nameiRNP24_SCHPO
AccessioniPrimary (citable) accession number: Q09100
Secondary accession number(s): O74303, Q9UU22
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: April 27, 2001
Last modified: January 20, 2016
This is version 110 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.