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Q08YE2 (Q08YE2_STIAD) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length438 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. SAAS SAAS001998 RuleBase RU000609 HAMAP-Rule MF_00455

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. SAAS SAAS001998 RuleBase RU000610 HAMAP-Rule MF_00455

Subcellular location

Cytoplasm By similarity SAAS SAAS001998 RuleBase RU000610 HAMAP-Rule MF_00455.

Sequence similarities

Belongs to the xylose isomerase family. RuleBase RU000609 HAMAP-Rule MF_00455

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1021 By similarity HAMAP-Rule MF_00455
Active site1051 By similarity HAMAP-Rule MF_00455
Metal binding2331Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2691Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2691Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2721Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2971Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3081Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3101Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3401Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
Q08YE2 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: D79D3CE090618302

FASTA43848,793
        10         20         30         40         50         60 
MREPFFADIA PVRYEGLKST HPLAYRWYEP NRLVLGRSMA EHLRLAVCYW HTFCWAGSDP 

        70         80         90        100        110        120 
FGPATMPRPW MQPGDAMALA EQKLSVAFEL FEKLGVPFFT FHDRDLAPEL GSLRASQHAL 

       130        140        150        160        170        180 
KVMLDKAQVM MERTGVKLLW GTANLFSHPR YMAGAATNPD PEVFAHAAAQ VRDALEATHR 

       190        200        210        220        230        240 
LGGANYVLWG GREGYDTLLN THLKREIDQL GRFLNLVVEH KHKLGFKGTI LIEPKPMEPT 

       250        260        270        280        290        300 
KHQYDYDVST VYGFLERSGL AKEVKVNIEV NHATLAGHTF DHEVATAIAL GIFGSIDMNR 

       310        320        330        340        350        360 
GDPQNGWDTD QFPNNAPELV LPLYRILQAG GFTTGGINFD AKVRRQSIEP VDLLHAHVGA 

       370        380        390        400        410        420 
IDVLARALLA AAAMLEEGAL SRHIDQRYAG WEGELGRKIT EGQIDLAGLA NLAVDADLAP 

       430 
KPRSGRQEML ENLVNRYI 

« Hide

References

« Hide 'large scale' references
[1]Nierman W.C.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DW4/3-1 EMBL EAU65496.1.
[2]"Evolution of fruiting body formation in Myxococcales: a comparative genomic analysis."
Huntley S., Hamann N., Wegener-Feldbruegge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Mueller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DW4/3-1.
[3]"Comparative genomic analysis of fruiting body formation in Myxococcales."
Huntley S., Hamann N., Wegener-Feldbrugge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Muller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
Mol. Biol. Evol. 28:1083-1097(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DW4/3-1 EMBL ADO70176.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002271 Genomic DNA. Translation: ADO70176.1.
AAMD01000080 Genomic DNA. Translation: EAU65496.1.
RefSeqYP_003952003.1. NC_014623.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO70176; ADO70176; STAUR_2372.
EAU65496; EAU65496; STIAU_1199.
GeneID9875865.
KEGGsur:STAUR_2372.
PATRIC38557084. VBIStiAur43712_4612.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01805.

Enzyme and pathway databases

BioCycSAUR378806:GCZI-2372-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ08YE2_STIAD
AccessionPrimary (citable) accession number: Q08YE2
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: July 9, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)