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Q08YE2

- Q08YE2_STIAD

UniProt

Q08YE2 - Q08YE2_STIAD

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Protein
Xylose isomerase
Gene
xylA, STAUR_2372, STIAU_1199
Organism
Stigmatella aurantiaca (strain DW4/3-1)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotations

Cofactori

Binds 2 magnesium ions per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei102 – 1021 By similarityUniRule annotation
Active sitei105 – 1051 By similarityUniRule annotation
Metal bindingi233 – 2331Magnesium 1 By similarityUniRule annotation
Metal bindingi269 – 2691Magnesium 1 By similarityUniRule annotation
Metal bindingi269 – 2691Magnesium 2 By similarityUniRule annotation
Metal bindingi272 – 2721Magnesium 2 By similarityUniRule annotation
Metal bindingi297 – 2971Magnesium 1 By similarityUniRule annotation
Metal bindingi308 – 3081Magnesium 2 By similarityUniRule annotation
Metal bindingi310 – 3101Magnesium 2 By similarityUniRule annotation
Metal bindingi340 – 3401Magnesium 1 By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotations, Xylose metabolismUniRule annotationSAAS annotations

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciSAUR378806:GCZI-2372-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotationImported
Ordered Locus Names:STAUR_2372Imported
ORF Names:STIAU_1199Imported
OrganismiStigmatella aurantiaca (strain DW4/3-1)Imported
Taxonomic identifieri378806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeCystobacteraceaeStigmatella
ProteomesiUP000001351: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliQ08YE2.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK01805.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q08YE2-1 [UniParc]FASTAAdd to Basket

« Hide

MREPFFADIA PVRYEGLKST HPLAYRWYEP NRLVLGRSMA EHLRLAVCYW    50
HTFCWAGSDP FGPATMPRPW MQPGDAMALA EQKLSVAFEL FEKLGVPFFT 100
FHDRDLAPEL GSLRASQHAL KVMLDKAQVM MERTGVKLLW GTANLFSHPR 150
YMAGAATNPD PEVFAHAAAQ VRDALEATHR LGGANYVLWG GREGYDTLLN 200
THLKREIDQL GRFLNLVVEH KHKLGFKGTI LIEPKPMEPT KHQYDYDVST 250
VYGFLERSGL AKEVKVNIEV NHATLAGHTF DHEVATAIAL GIFGSIDMNR 300
GDPQNGWDTD QFPNNAPELV LPLYRILQAG GFTTGGINFD AKVRRQSIEP 350
VDLLHAHVGA IDVLARALLA AAAMLEEGAL SRHIDQRYAG WEGELGRKIT 400
EGQIDLAGLA NLAVDADLAP KPRSGRQEML ENLVNRYI 438
Length:438
Mass (Da):48,793
Last modified:October 31, 2006 - v1
Checksum:iD79D3CE090618302
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002271 Genomic DNA. Translation: ADO70176.1.
AAMD01000080 Genomic DNA. Translation: EAU65496.1.
RefSeqiWP_002615196.1. NZ_AAMD01000080.1.
YP_003952003.1. NC_014623.1.

Genome annotation databases

EnsemblBacteriaiADO70176; ADO70176; STAUR_2372.
EAU65496; EAU65496; STIAU_1199.
GeneIDi9875865.
KEGGisur:STAUR_2372.
PATRICi38557084. VBIStiAur43712_4612.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002271 Genomic DNA. Translation: ADO70176.1 .
AAMD01000080 Genomic DNA. Translation: EAU65496.1 .
RefSeqi WP_002615196.1. NZ_AAMD01000080.1.
YP_003952003.1. NC_014623.1.

3D structure databases

ProteinModelPortali Q08YE2.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADO70176 ; ADO70176 ; STAUR_2372 .
EAU65496 ; EAU65496 ; STIAU_1199 .
GeneIDi 9875865.
KEGGi sur:STAUR_2372.
PATRICi 38557084. VBIStiAur43712_4612.

Phylogenomic databases

KOi K01805.

Enzyme and pathway databases

BioCyci SAUR378806:GCZI-2372-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Nierman W.C.
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DW4/3-1Imported.
  2. "Evolution of fruiting body formation in Myxococcales: a comparative genomic analysis."
    Huntley S., Hamann N., Wegener-Feldbruegge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Mueller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
    Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DW4/3-1.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DW4/3-1Imported.

Entry informationi

Entry nameiQ08YE2_STIAD
AccessioniPrimary (citable) accession number: Q08YE2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: September 3, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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