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Q08YE2

- Q08YE2_STIAD

UniProt

Q08YE2 - Q08YE2_STIAD

Protein

Xylose isomerase

Gene

xylA

Organism
Stigmatella aurantiaca (strain DW4/3-1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (31 Oct 2006)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei102 – 1021UniRule annotation
    Active sitei105 – 1051UniRule annotation
    Metal bindingi233 – 2331Magnesium 1UniRule annotation
    Metal bindingi269 – 2691Magnesium 1UniRule annotation
    Metal bindingi269 – 2691Magnesium 2UniRule annotation
    Metal bindingi272 – 2721Magnesium 2UniRule annotation
    Metal bindingi297 – 2971Magnesium 1UniRule annotation
    Metal bindingi308 – 3081Magnesium 2UniRule annotation
    Metal bindingi310 – 3101Magnesium 2UniRule annotation
    Metal bindingi340 – 3401Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciSAUR378806:GCZI-2372-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotationImported
    Ordered Locus Names:STAUR_2372Imported
    ORF Names:STIAU_1199Imported
    OrganismiStigmatella aurantiaca (strain DW4/3-1)Imported
    Taxonomic identifieri378806 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeCystobacteraceaeStigmatella
    ProteomesiUP000001351: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliQ08YE2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    KOiK01805.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q08YE2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MREPFFADIA PVRYEGLKST HPLAYRWYEP NRLVLGRSMA EHLRLAVCYW    50
    HTFCWAGSDP FGPATMPRPW MQPGDAMALA EQKLSVAFEL FEKLGVPFFT 100
    FHDRDLAPEL GSLRASQHAL KVMLDKAQVM MERTGVKLLW GTANLFSHPR 150
    YMAGAATNPD PEVFAHAAAQ VRDALEATHR LGGANYVLWG GREGYDTLLN 200
    THLKREIDQL GRFLNLVVEH KHKLGFKGTI LIEPKPMEPT KHQYDYDVST 250
    VYGFLERSGL AKEVKVNIEV NHATLAGHTF DHEVATAIAL GIFGSIDMNR 300
    GDPQNGWDTD QFPNNAPELV LPLYRILQAG GFTTGGINFD AKVRRQSIEP 350
    VDLLHAHVGA IDVLARALLA AAAMLEEGAL SRHIDQRYAG WEGELGRKIT 400
    EGQIDLAGLA NLAVDADLAP KPRSGRQEML ENLVNRYI 438
    Length:438
    Mass (Da):48,793
    Last modified:October 31, 2006 - v1
    Checksum:iD79D3CE090618302
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002271 Genomic DNA. Translation: ADO70176.1.
    AAMD01000080 Genomic DNA. Translation: EAU65496.1.
    RefSeqiWP_002615196.1. NZ_AAMD01000080.1.
    YP_003952003.1. NC_014623.1.

    Genome annotation databases

    EnsemblBacteriaiADO70176; ADO70176; STAUR_2372.
    EAU65496; EAU65496; STIAU_1199.
    GeneIDi9875865.
    KEGGisur:STAUR_2372.
    PATRICi38557084. VBIStiAur43712_4612.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002271 Genomic DNA. Translation: ADO70176.1 .
    AAMD01000080 Genomic DNA. Translation: EAU65496.1 .
    RefSeqi WP_002615196.1. NZ_AAMD01000080.1.
    YP_003952003.1. NC_014623.1.

    3D structure databases

    ProteinModelPortali Q08YE2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADO70176 ; ADO70176 ; STAUR_2372 .
    EAU65496 ; EAU65496 ; STIAU_1199 .
    GeneIDi 9875865.
    KEGGi sur:STAUR_2372.
    PATRICi 38557084. VBIStiAur43712_4612.

    Phylogenomic databases

    KOi K01805.

    Enzyme and pathway databases

    BioCyci SAUR378806:GCZI-2372-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Nierman W.C.
      Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: DW4/3-1Imported.
    2. "Evolution of fruiting body formation in Myxococcales: a comparative genomic analysis."
      Huntley S., Hamann N., Wegener-Feldbruegge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Mueller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
      Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DW4/3-1Imported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: DW4/3-1Imported.

    Entry informationi

    Entry nameiQ08YE2_STIAD
    AccessioniPrimary (citable) accession number: Q08YE2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2006
    Last sequence update: October 31, 2006
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3