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Q08SZ6 (Q08SZ6_STIAD) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118 EMBL EAU63606.1
Ordered Locus Names:STAUR_3736 EMBL ADO71524.1, STAUR_5022 EMBL ADO72799.1
ORF Names:STIAU_3482 EMBL EAU63606.1, STIAU_5141 EMBL EAU65867.1
OrganismStigmatella aurantiaca (strain DW4/3-1) [Complete proteome] [HAMAP] EMBL EAU63606.1
Taxonomic identifier378806 [NCBI]
Taxonomic lineageBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeCystobacteraceaeStigmatella

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
Q08SZ6 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 85EA85F4BDEF5545

FASTA39643,351
        10         20         30         40         50         60 
MAKEKFERNK PHVNIGTIGH VDHGKTSLTA AITKVLAKTG GATFLAYDQI DKAPEERERG 

        70         80         90        100        110        120 
ITISTAHVEY QTKNRHYAHV DCPGHADYVK NMITGAAQMD GAILVVSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLARQVGVPY IVVFLNKVDM LDDPELRELV EMEVRDLLKK YEFPGDSIPI IPGSALKALE 

       190        200        210        220        230        240 
GDTSDIGEGA ILKLMAAVDE YIPTPQRATD KPFLMPVEDV FSIAGRGTVA TGRVERGKIK 

       250        260        270        280        290        300 
VGEEVEIVGI RPTQKTVITG VEMFRKLLDE GMAGDNIGAL LRGLKREDLE RGQVLAKPGS 

       310        320        330        340        350        360 
INPHTKFKAQ VYVLSKEEGG RHTPFFKGYR PQFYFRTTDV TGTVKLPDNV EMVMPGDNIA 

       370        380        390 
IEVELITPVA MEKELRFAIR EGGRTVGAGV VADIIA 

« Hide

References

« Hide 'large scale' references
[1]Nierman W.C.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DW4/3-1 EMBL EAU63606.1.
[2]"Evolution of fruiting body formation in Myxococcales: a comparative genomic analysis."
Huntley S., Hamann N., Wegener-Feldbruegge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Mueller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DW4/3-1.
[3]"Comparative genomic analysis of fruiting body formation in Myxococcales."
Huntley S., Hamann N., Wegener-Feldbrugge S., Treuner-Lange A., Kube M., Reinhardt R., Klages S., Muller R., Ronning C.M., Nierman W.C., Sogaard-Andersen L.
Mol. Biol. Evol. 28:1083-1097(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DW4/3-1 EMBL ADO71524.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002271 Genomic DNA. Translation: ADO71524.1.
CP002271 Genomic DNA. Translation: ADO72799.1.
AAMD01000155 Genomic DNA. Translation: EAU63606.1.
AAMD01000069 Genomic DNA. Translation: EAU65867.1.
RefSeqYP_003953351.1. NC_014623.1.
YP_003954626.1. NC_014623.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO71524; ADO71524; STAUR_3736.
ADO72799; ADO72799; STAUR_5022.
EAU63606; EAU63606; STIAU_3482.
EAU65867; EAU65867; STIAU_5141.
GeneID9877229.
9878515.
KEGGsur:STAUR_3736.
sur:STAUR_5022.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02358.

Enzyme and pathway databases

BioCycSAUR378806:GCZI-3736-MONOMER.
SAUR378806:GCZI-5022-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ08SZ6_STIAD
AccessionPrimary (citable) accession number: Q08SZ6
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: July 9, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)