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Protein

RUN domain-containing protein 3B

Gene

RUNDC3B

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
RUN domain-containing protein 3B
Gene namesi
Name:RUNDC3B
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
Proteomesi
  • UP000009136 Componenti: Chromosome 4

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 423423RUN domain-containing protein 3BPRO_0000336048Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei231 – 2311PhosphoserineBy similarity
Modified residuei232 – 2321PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ08E29.

Expressioni

Gene expression databases

BgeeiENSBTAG00000021313.

Interactioni

Subunit structurei

Interacts with RAP2A.By similarity

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000052812.

Structurei

3D structure databases

ProteinModelPortaliQ08E29.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini56 – 205150RUNPROSITE-ProRule annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili293 – 34149Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi14 – 185Poly-Gly

Sequence similaritiesi

Belongs to the RUNDC3 family.Curated
Contains 1 RUN domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG4381. Eukaryota.
ENOG410XRAX. LUCA.
GeneTreeiENSGT00550000074558.
HOGENOMiHOG000143407.
HOVERGENiHBG052747.
InParanoidiQ08E29.
OMAiTHLTNQW.
OrthoDBiEOG091G06Y5.
TreeFamiTF323904.

Family and domain databases

InterProiIPR004012. Run_dom.
[Graphical view]
PfamiPF02759. RUN. 1 hit.
[Graphical view]
SMARTiSM00593. RUN. 1 hit.
[Graphical view]
PROSITEiPS50826. RUN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q08E29-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASRSLGGLG GSRGGGGGVK KSLSARNAAV ERRNLITVCR FSVKTLIDRS
60 70 80 90 100
CFETIDDSSP EFNNFAAILE QILSHRLKES SQSCRWLSHL QIPLQGQVTW
110 120 130 140 150
FGYGSPRSFW DYIRVACRKV SQNCICSIEN MEHVSSSRAK GRAWIRVALM
160 170 180 190 200
EKHLSEYIST ALRDFKTTRR FYEDGAIVLG EEANMLAGML LGLNAIDFSF
210 220 230 240 250
CLKGERLDGN LPAVIDYIPY LRFTQSSDSI SSDEEELRTL GSSDSESSTP
260 270 280 290 300
EKAGPPVIMD ENSWFNKCKR VKQKYQLTLE QKGYLEELLQ LRENQLSESV
310 320 330 340 350
AQNKILLQRI EDSDLAHKLE KEQLEYIIVE LQDQLKSYQS LDQLSAEVSL
360 370 380 390 400
SQTSLDPGQS QEGDGKQDTL NLISEGKEDT PSLLGLCGSL TSVASYKSLT
410 420
SLKSNDYLAS PTTEMTSPGL TPS
Length:423
Mass (Da):47,034
Last modified:October 31, 2006 - v1
Checksum:iEB090F7636698512
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC123450 mRNA. Translation: AAI23451.1.
RefSeqiNP_001070342.1. NM_001076874.1.
UniGeneiBt.40982.

Genome annotation databases

EnsembliENSBTAT00000055755; ENSBTAP00000052812; ENSBTAG00000021313.
GeneIDi525116.
KEGGibta:525116.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC123450 mRNA. Translation: AAI23451.1.
RefSeqiNP_001070342.1. NM_001076874.1.
UniGeneiBt.40982.

3D structure databases

ProteinModelPortaliQ08E29.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000052812.

Proteomic databases

PaxDbiQ08E29.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSBTAT00000055755; ENSBTAP00000052812; ENSBTAG00000021313.
GeneIDi525116.
KEGGibta:525116.

Organism-specific databases

CTDi154661.

Phylogenomic databases

eggNOGiKOG4381. Eukaryota.
ENOG410XRAX. LUCA.
GeneTreeiENSGT00550000074558.
HOGENOMiHOG000143407.
HOVERGENiHBG052747.
InParanoidiQ08E29.
OMAiTHLTNQW.
OrthoDBiEOG091G06Y5.
TreeFamiTF323904.

Gene expression databases

BgeeiENSBTAG00000021313.

Family and domain databases

InterProiIPR004012. Run_dom.
[Graphical view]
PfamiPF02759. RUN. 1 hit.
[Graphical view]
SMARTiSM00593. RUN. 1 hit.
[Graphical view]
PROSITEiPS50826. RUN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRUN3B_BOVIN
AccessioniPrimary (citable) accession number: Q08E29
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: October 31, 2006
Last modified: September 7, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.