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Q08DA3

- UBP16_BOVIN

UniProt

Q08DA3 - UBP16_BOVIN

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Protein

Ubiquitin carboxyl-terminal hydrolase 16

Gene
USP16
Organism
Bos taurus (Bovine)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at transcript leveli

Functioni

Specifically deubiquitinates 'Lys-120' of histone H2A (H2AK119Ub), a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Deubiquitination of histone H2A is a prerequisite for subsequent phosphorylation at 'Ser-11' of histone H3 (H3S10ph), and is required for chromosome segregation when cells enter into mitosis. In resting B- and T-lymphocytes, phosphorylation by AURKB leads to enhance its activity, thereby maintaining transcription in resting lymphocytes. Regulates Hox gene expression via histone H2A deubiquitination. Prefers nucleosomal substrates. Does not deubiquitinate histone H2B By similarity.UniRule annotation

Catalytic activityi

Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi24 – 241Zinc 1 By similarity
Metal bindingi26 – 261Zinc 1 By similarity
Metal bindingi48 – 481Zinc 2 By similarity
Metal bindingi51 – 511Zinc 2 By similarity
Metal bindingi74 – 741Zinc 3 By similarity
Metal bindingi77 – 771Zinc 3 By similarity
Metal bindingi82 – 821Zinc 2 By similarity
Metal bindingi90 – 901Zinc 2 By similarity
Metal bindingi94 – 941Zinc 3 By similarity
Metal bindingi103 – 1031Zinc 3 By similarity
Metal bindingi116 – 1161Zinc 1 By similarity
Metal bindingi119 – 1191Zinc 1 By similarity
Active sitei204 – 2041Nucleophile By similarity
Active sitei760 – 7601Proton acceptor By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri60 – 12566UBP-typeUniRule annotationAdd
BLAST

GO - Molecular functioni

  1. cysteine-type endopeptidase activity Source: UniProtKB
  2. histone binding Source: UniProtKB
  3. transcription coactivator activity Source: UniProtKB
  4. ubiquitin binding Source: UniProtKB
  5. ubiquitin-specific protease activity Source: UniProtKB
  6. ubiquitin thiolesterase activity Source: UniProtKB
  7. zinc ion binding Source: UniProtKB

GO - Biological processi

  1. histone deubiquitination Source: UniProtKB
  2. mitotic nuclear division Source: UniProtKB
  3. monoubiquitinated histone H2A deubiquitination Source: UniProtKB
  4. positive regulation of transcription, DNA-templated Source: UniProtKB
  5. positive regulation of transcription from RNA polymerase II promoter Source: UniProtKB
  6. protein homotetramerization Source: UniProtKB
  7. regulation of transcription from RNA polymerase II promoter Source: UniProtKB
  8. transcription, DNA-templated Source: UniProtKB-KW
  9. ubiquitin-dependent protein catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Activator, Chromatin regulator, Hydrolase, Protease, Thiol protease

Keywords - Biological processi

Cell cycle, Cell division, Mitosis, Transcription, Transcription regulation, Ubl conjugation pathway

Keywords - Ligandi

Metal-binding, Zinc

Protein family/group databases

MEROPSiC19.021.

Names & Taxonomyi

Protein namesi
Recommended name:
Ubiquitin carboxyl-terminal hydrolase 16 (EC:3.4.19.12)
Alternative name(s):
Deubiquitinating enzyme 16
Ubiquitin thioesterase 16
Ubiquitin-specific-processing protease 16
Gene namesi
Name:USP16
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
ProteomesiUP000009136: Chromosome 1

Subcellular locationi

Nucleus By similarity UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 826826Ubiquitin carboxyl-terminal hydrolase 16UniRule annotationPRO_0000367501Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei414 – 4141Phosphoserine By similarity
Modified residuei551 – 5511Phosphoserine By similarity

Post-translational modificationi

Phosphorylated at the onset of mitosis and dephosphorylated during the metaphase/anaphase transition. Phosphorylation by AURKB enhances the deubiquitinase activity By similarity.UniRule annotation

Keywords - PTMi

Phosphoprotein

Proteomic databases

PRIDEiQ08DA3.

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000026801.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini195 – 825631USPAdd
BLAST

Domaini

The UBP-type zinc finger binds 3 zinc ions that form a pair of cross-braced ring fingers encapsulated within a third zinc finger in the primary structure. It recognizes the C-terminal tail of free ubiquitin By similarity.UniRule annotation

Sequence similaritiesi

Contains 1 USP domain.

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiCOG5207.
GeneTreeiENSGT00750000117419.
HOGENOMiHOG000154755.
HOVERGENiHBG062704.
InParanoidiQ08DA3.
KOiK11844.
OMAiAFNTYEC.
TreeFamiTF326075.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
HAMAPiMF_03062. UBP16.
InterProiIPR018200. Pept_C19ubi-hydrolase_C_CS.
IPR001394. Peptidase_C19_UCH.
IPR028889. UCH/PAN2.
IPR013083. Znf_RING/FYVE/PHD.
IPR001607. Znf_UBP.
[Graphical view]
PfamiPF00443. UCH. 1 hit.
PF02148. zf-UBP. 1 hit.
[Graphical view]
PROSITEiPS00972. USP_1. 1 hit.
PS00973. USP_2. 1 hit.
PS50235. USP_3. 1 hit.
PS50271. ZF_UBP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q08DA3-1 [UniParc]FASTAAdd to Basket

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MGKKRTKGKT VPIDDSSESL EPVCRHIRKG LEQGNLKKAL VNVEWNICQD    50
CKTDNKVKDK SEEETEENPS VWLCLKCGHQ GCGRNSQEQH ALKHYMKPRS 100
EPHCLVLSLD NWSVWCYLCD DEVHYCNSNR LGQVVDYVRK QAGNTTPESA 150
EDNGNIELEN KKLEKESKNE QEREKKENMA RENPSMNSTS QITVKGLSNL 200
GNTCFFNAVM QNLSQTPVLR ELLKEVKMSG TIVKIEPPDL ALTEPLEINL 250
EPPGPLTLAM SQFLNEMQET KKGIVTPREL FSQVCKKAVR FKGYQQQDSQ 300
ELLRYLLDGM RAEEHQRVSK GILKAFDNST EKVDEELKNK VKEYEKKKSV 350
PSFVDRIFGG ELTSTIMCDE CRTVSLVHES FLDLSLPVLD DQSGKKSIND 400
KNLKKTMEDE DKDSEEEKDN DSYLKERNDI PSGTSKHLQK KAKKQAKKQA 450
KNQRRQQKIQ GKVLHLNDVY AIDHPEDNEC EVEMSLQREA DIKSNHISQE 500
EVAPKEYCVN QKDLNGHEKM IESITDNQKS TEEAAMKNVS VDNDLEVLAS 550
SATECPRNLN GAYLKEGSNG EVDISSGFEN LNLNAALQPD EINIEILDDD 600
PTPGTKVYEV VNEDPETAFC TLANREAFNT DECSVQHCLY QFTRNEKLRD 650
ANKLLCEVCT RRQYSGPKAN MKGERKHIYT NAKKQMLISL APPVLTLHFK 700
RFQQAGFNLR KVNKHIKFPE ILDLAPFCTL KCKNVAEEHT RVLYSLYGVV 750
EHSGTMRSGH YTAYAKTRTA STHLSNLVLH GDIPQDFEME STKGQWFHIS 800
DTHVQAVPTT KVLSSQAYLL FYERIL 826
Length:826
Mass (Da):94,050
Last modified:December 11, 2013 - v2
Checksum:i54A141CB98B711CE
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti771 – 7711S → N in AAI23862. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DAAA02000172 Genomic DNA. No translation available.
DAAA02000173 Genomic DNA. No translation available.
BC123861 mRNA. Translation: AAI23862.1.
RefSeqiNP_001070335.1. NM_001076867.1.
UniGeneiBt.51616.

Genome annotation databases

EnsembliENSBTAT00000026801; ENSBTAP00000026801; ENSBTAG00000020122.
GeneIDi519992.
KEGGibta:519992.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DAAA02000172 Genomic DNA. No translation available.
DAAA02000173 Genomic DNA. No translation available.
BC123861 mRNA. Translation: AAI23862.1 .
RefSeqi NP_001070335.1. NM_001076867.1.
UniGenei Bt.51616.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9913.ENSBTAP00000026801.

Protein family/group databases

MEROPSi C19.021.

Proteomic databases

PRIDEi Q08DA3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSBTAT00000026801 ; ENSBTAP00000026801 ; ENSBTAG00000020122 .
GeneIDi 519992.
KEGGi bta:519992.

Organism-specific databases

CTDi 10600.

Phylogenomic databases

eggNOGi COG5207.
GeneTreei ENSGT00750000117419.
HOGENOMi HOG000154755.
HOVERGENi HBG062704.
InParanoidi Q08DA3.
KOi K11844.
OMAi AFNTYEC.
TreeFami TF326075.

Miscellaneous databases

NextBioi 20872996.

Family and domain databases

Gene3Di 3.30.40.10. 1 hit.
HAMAPi MF_03062. UBP16.
InterProi IPR018200. Pept_C19ubi-hydrolase_C_CS.
IPR001394. Peptidase_C19_UCH.
IPR028889. UCH/PAN2.
IPR013083. Znf_RING/FYVE/PHD.
IPR001607. Znf_UBP.
[Graphical view ]
Pfami PF00443. UCH. 1 hit.
PF02148. zf-UBP. 1 hit.
[Graphical view ]
PROSITEi PS00972. USP_1. 1 hit.
PS00973. USP_2. 1 hit.
PS50235. USP_3. 1 hit.
PS50271. ZF_UBP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Hereford.
  2. NIH - Mammalian Gene Collection (MGC) project
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Hereford.
    Tissue: Fetal muscle.

Entry informationi

Entry nameiUBP16_BOVIN
AccessioniPrimary (citable) accession number: Q08DA3
Secondary accession number(s): F1N2B1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: December 11, 2013
Last modified: September 3, 2014
This is version 59 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Peptidase families
    Classification of peptidase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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