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Q08CA3 (Q08CA3_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

F13a1 protein EMBL AAI65658.1
Gene names
Name:f13a1b ZFIN ZDB-GENE-030131-9634
Synonyms:f13a1 ZFIN ZDB-GENE-030131-9634 EMBL AAI24321.1
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) EMBL AAI24321.1
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Protein attributes

Sequence length742 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Cofactor

Binds 1 calcium ion per subunit By similarity. PIRSR PIRSR000459-2

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3331 By similarity PIRSR PIRSR000459-1
Active site3921 By similarity PIRSR PIRSR000459-1
Active site4151 By similarity PIRSR PIRSR000459-1
Metal binding4551Calcium By similarity PIRSR PIRSR000459-2
Metal binding4571Calcium By similarity PIRSR PIRSR000459-2
Metal binding5041Calcium By similarity PIRSR PIRSR000459-2
Metal binding5091Calcium By similarity PIRSR PIRSR000459-2

Sequences

Sequence LengthMass (Da)Tools
Q08CA3 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: C681867FD58EBF83

FASTA74283,579
        10         20         30         40         50         60 
MADQVAPENP TPAAAPTVRP KQRVSHRGRS AGGRASSNQQ EGKVEEFEPF MLMPRGPPPL 

        70         80         90        100        110        120 
TEYLDIFDVD VLKQPNEVNK QAHHTHLYSS NFLIVRRAQE FQIKITFNRP YKPAEDKFAV 

       130        140        150        160        170        180 
EFVIGPVPQY SKGTYIPVFP TAKRQSVWSG RVIESSENVV TMGITPSAEC IVGKYMTYIG 

       190        200        210        220        230        240 
VETPYGIRRT RRDPNTDIYI LFNPWSPADP VFLDDEEERE ECVMNELGII YHGAYDDVSE 

       250        260        270        280        290        300 
RAWNYGQFEF GVLDACLFVM DKADMPLSNR GDVVKVTRVA SAMLNSRDDD GVLVGNWSGD 

       310        320        330        340        350        360 
YMYGVPPTSW TGSVEILLDH ANSSGTPVCY AQCWVYAAVF NTFLRCLGIP SRVVTNFFSA 

       370        380        390        400        410        420 
HDNDGNLKMD IILDENGKLD RNRTKDSIWN YHCWNECYMA RPDLPSGFGG WQVVDATPQE 

       430        440        450        460        470        480 
TSDGMFRCGP ASVAAIKHGQ ICYPFDAPFV FAEVNSDVVF YRRRKDGILE VVKVNQTHVG 

       490        500        510        520        530        540 
RMVLTKAVLH SGRRDITNQY KFPEGSPEER RVLEKAEEFG CQREKSSPAL SDVDVEIHSL 

       550        560        570        580        590        600 
DVNVGENFDV TLQFTNRSDQ RRTADVYITG TVVYYTGVPS GEVVFKTPKV KLEPMQSKEE 

       610        620        630        640        650        660 
KVLVRSEDYM NKLVEQRNIH FIATGKIKET GQIITAMKVI AMHHPKLTVK VTGSPRVSEE 

       670        680        690        700        710        720 
MYVSVEFTNP FKFSLENVDL RVEGPGVLPF KYKQYSVIAP GTSITWTEAF SPRRAGSTKV 

       730        740 
FAKLDCAALR QVYGETELTV QE 

« Hide

References

[1]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Ovary EMBL AAI24321.1.
[2]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: PCR rescue EMBL AAI65658.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC124320 mRNA. Translation: AAI24321.1.
BC165658 mRNA. Translation: AAI65658.1.
RefSeqNP_001070622.1. NM_001077154.1.
UniGeneDr.16206.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7955.ENSDARP00000093311.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID561287.
KEGGdre:561287.

Organism-specific databases

CTD561287.
ZFINZDB-GENE-030131-9634. f13a1b.

Phylogenomic databases

eggNOGNOG80379.
HOGENOMHOG000231695.
HOVERGENHBG004342.
InParanoidQ08CA3.
KOK03917.

Family and domain databases

Gene3D2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERPTHR11590. PTHR11590. 1 hit.
PfamPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFPIRSF000459. TGM_EBP42. 1 hit.
SMARTSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.
ProtoNetSearch...

Other

NextBio20883853.

Entry information

Entry nameQ08CA3_DANRE
AccessionPrimary (citable) accession number: Q08CA3
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: July 9, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)