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Protein
Submitted name:

Coagulation factor XIII, A1 polypeptide

Gene

f13a1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei333 – 3331UniRule annotation
Active sitei392 – 3921UniRule annotation
Active sitei415 – 4151UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Coagulation factor XIII, A1 polypeptideImported
Submitted name:
F13a1 proteinImported
Gene namesi
Name:f13a1bImported
Synonyms:f13a1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-030131-9634. f13a1b.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000123898.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG80379.
HOGENOMiHOG000231695.
HOVERGENiHBG004342.
KOiK03917.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProiIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERiPTHR11590. PTHR11590. 1 hit.
PfamiPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000459. TGM_EBP42. 1 hit.
SMARTiSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMiSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.

Sequencei

Sequence statusi: Complete.

Q08CA3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADQVAPENP TPAAAPTVRP KQRVSHRGRS AGGRASSNQQ EGKVEEFEPF
60 70 80 90 100
MLMPRGPPPL TEYLDIFDVD VLKQPNEVNK QAHHTHLYSS NFLIVRRAQE
110 120 130 140 150
FQIKITFNRP YKPAEDKFAV EFVIGPVPQY SKGTYIPVFP TAKRQSVWSG
160 170 180 190 200
RVIESSENVV TMGITPSAEC IVGKYMTYIG VETPYGIRRT RRDPNTDIYI
210 220 230 240 250
LFNPWSPADP VFLDDEEERE ECVMNELGII YHGAYDDVSE RAWNYGQFEF
260 270 280 290 300
GVLDACLFVM DKADMPLSNR GDVVKVTRVA SAMLNSRDDD GVLVGNWSGD
310 320 330 340 350
YMYGVPPTSW TGSVEILLDH ANSSGTPVCY AQCWVYAAVF NTFLRCLGIP
360 370 380 390 400
SRVVTNFFSA HDNDGNLKMD IILDENGKLD RNRTKDSIWN YHCWNECYMA
410 420 430 440 450
RPDLPSGFGG WQVVDATPQE TSDGMFRCGP ASVAAIKHGQ ICYPFDAPFV
460 470 480 490 500
FAEVNSDVVF YRRRKDGILE VVKVNQTHVG RMVLTKAVLH SGRRDITNQY
510 520 530 540 550
KFPEGSPEER RVLEKAEEFG CQREKSSPAL SDVDVEIHSL DVNVGENFDV
560 570 580 590 600
TLQFTNRSDQ RRTADVYITG TVVYYTGVPS GEVVFKTPKV KLEPMQSKEE
610 620 630 640 650
KVLVRSEDYM NKLVEQRNIH FIATGKIKET GQIITAMKVI AMHHPKLTVK
660 670 680 690 700
VTGSPRVSEE MYVSVEFTNP FKFSLENVDL RVEGPGVLPF KYKQYSVIAP
710 720 730 740
GTSITWTEAF SPRRAGSTKV FAKLDCAALR QVYGETELTV QE
Length:742
Mass (Da):83,579
Last modified:October 31, 2006 - v1
Checksum:iC681867FD58EBF83
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC124320 mRNA. Translation: AAI24321.1.
BC165658 mRNA. Translation: AAI65658.1.
RefSeqiNP_001070622.1. NM_001077154.1.
UniGeneiDr.16206.

Genome annotation databases

GeneIDi561287.
KEGGidre:561287.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC124320 mRNA. Translation: AAI24321.1.
BC165658 mRNA. Translation: AAI65658.1.
RefSeqiNP_001070622.1. NM_001077154.1.
UniGeneiDr.16206.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000123898.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi561287.
KEGGidre:561287.

Organism-specific databases

CTDi561287.
ZFINiZDB-GENE-030131-9634. f13a1b.

Phylogenomic databases

eggNOGiNOG80379.
HOGENOMiHOG000231695.
HOVERGENiHBG004342.
KOiK03917.

Miscellaneous databases

NextBioi20883853.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProiIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERiPTHR11590. PTHR11590. 1 hit.
PfamiPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000459. TGM_EBP42. 1 hit.
SMARTiSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMiSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: OvaryImported.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescueImported.

Entry informationi

Entry nameiQ08CA3_DANRE
AccessioniPrimary (citable) accession number: Q08CA3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: July 22, 2015
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.