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Q08CA3

- Q08CA3_DANRE

UniProt

Q08CA3 - Q08CA3_DANRE

Protein
Submitted name:

Coagulation factor XIII, A1 polypeptide

Gene

f13a1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 61 (01 Oct 2014)
      Sequence version 1 (31 Oct 2006)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 1 calcium ion per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei333 – 3331UniRule annotation
    Active sitei333 – 3331 By similarity
    Active sitei392 – 3921UniRule annotation
    Active sitei392 – 3921 By similarity
    Active sitei415 – 4151UniRule annotation
    Active sitei415 – 4151 By similarity
    Metal bindingi455 – 4551CalciumUniRule annotation
    Metal bindingi457 – 4571CalciumUniRule annotation
    Metal bindingi504 – 5041CalciumUniRule annotation
    Metal bindingi509 – 5091CalciumUniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. protein-glutamine gamma-glutamyltransferase activity Source: InterPro

    GO - Biological processi

    1. peptide cross-linking Source: InterPro

    Keywords - Ligandi

    CalciumUniRule annotation, Metal-bindingUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Coagulation factor XIII, A1 polypeptideImported
    Submitted name:
    F13a1 proteinImported
    Gene namesi
    Name:f13a1bImported
    Synonyms:f13a1Imported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

    Organism-specific databases

    ZFINiZDB-GENE-030131-9634. f13a1b.

    Interactioni

    Protein-protein interaction databases

    STRINGi7955.ENSDARP00000093311.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG80379.
    HOGENOMiHOG000231695.
    HOVERGENiHBG004342.
    InParanoidiQ08CA3.
    KOiK03917.

    Family and domain databases

    Gene3Di2.60.40.10. 3 hits.
    3.90.260.10. 1 hit.
    InterProiIPR023608. Gln_gamma-glutamylTfrase_euk.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    IPR002931. Transglutaminase-like.
    IPR008958. Transglutaminase_C.
    IPR001102. Transglutaminase_N.
    [Graphical view]
    PANTHERiPTHR11590. PTHR11590. 1 hit.
    PfamiPF00927. Transglut_C. 2 hits.
    PF01841. Transglut_core. 1 hit.
    PF00868. Transglut_N. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000459. TGM_EBP42. 1 hit.
    SMARTiSM00460. TGc. 1 hit.
    [Graphical view]
    SUPFAMiSSF49309. SSF49309. 2 hits.
    SSF81296. SSF81296. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q08CA3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MADQVAPENP TPAAAPTVRP KQRVSHRGRS AGGRASSNQQ EGKVEEFEPF    50
    MLMPRGPPPL TEYLDIFDVD VLKQPNEVNK QAHHTHLYSS NFLIVRRAQE 100
    FQIKITFNRP YKPAEDKFAV EFVIGPVPQY SKGTYIPVFP TAKRQSVWSG 150
    RVIESSENVV TMGITPSAEC IVGKYMTYIG VETPYGIRRT RRDPNTDIYI 200
    LFNPWSPADP VFLDDEEERE ECVMNELGII YHGAYDDVSE RAWNYGQFEF 250
    GVLDACLFVM DKADMPLSNR GDVVKVTRVA SAMLNSRDDD GVLVGNWSGD 300
    YMYGVPPTSW TGSVEILLDH ANSSGTPVCY AQCWVYAAVF NTFLRCLGIP 350
    SRVVTNFFSA HDNDGNLKMD IILDENGKLD RNRTKDSIWN YHCWNECYMA 400
    RPDLPSGFGG WQVVDATPQE TSDGMFRCGP ASVAAIKHGQ ICYPFDAPFV 450
    FAEVNSDVVF YRRRKDGILE VVKVNQTHVG RMVLTKAVLH SGRRDITNQY 500
    KFPEGSPEER RVLEKAEEFG CQREKSSPAL SDVDVEIHSL DVNVGENFDV 550
    TLQFTNRSDQ RRTADVYITG TVVYYTGVPS GEVVFKTPKV KLEPMQSKEE 600
    KVLVRSEDYM NKLVEQRNIH FIATGKIKET GQIITAMKVI AMHHPKLTVK 650
    VTGSPRVSEE MYVSVEFTNP FKFSLENVDL RVEGPGVLPF KYKQYSVIAP 700
    GTSITWTEAF SPRRAGSTKV FAKLDCAALR QVYGETELTV QE 742
    Length:742
    Mass (Da):83,579
    Last modified:October 31, 2006 - v1
    Checksum:iC681867FD58EBF83
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC124320 mRNA. Translation: AAI24321.1.
    BC165658 mRNA. Translation: AAI65658.1.
    RefSeqiNP_001070622.1. NM_001077154.1.
    UniGeneiDr.16206.

    Genome annotation databases

    GeneIDi561287.
    KEGGidre:561287.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC124320 mRNA. Translation: AAI24321.1 .
    BC165658 mRNA. Translation: AAI65658.1 .
    RefSeqi NP_001070622.1. NM_001077154.1.
    UniGenei Dr.16206.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7955.ENSDARP00000093311.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 561287.
    KEGGi dre:561287.

    Organism-specific databases

    CTDi 561287.
    ZFINi ZDB-GENE-030131-9634. f13a1b.

    Phylogenomic databases

    eggNOGi NOG80379.
    HOGENOMi HOG000231695.
    HOVERGENi HBG004342.
    InParanoidi Q08CA3.
    KOi K03917.

    Miscellaneous databases

    NextBioi 20883853.

    Family and domain databases

    Gene3Di 2.60.40.10. 3 hits.
    3.90.260.10. 1 hit.
    InterProi IPR023608. Gln_gamma-glutamylTfrase_euk.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    IPR002931. Transglutaminase-like.
    IPR008958. Transglutaminase_C.
    IPR001102. Transglutaminase_N.
    [Graphical view ]
    PANTHERi PTHR11590. PTHR11590. 1 hit.
    Pfami PF00927. Transglut_C. 2 hits.
    PF01841. Transglut_core. 1 hit.
    PF00868. Transglut_N. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000459. TGM_EBP42. 1 hit.
    SMARTi SM00460. TGc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49309. SSF49309. 2 hits.
    SSF81296. SSF81296. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: OvaryImported.
    2. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: PCR rescueImported.

    Entry informationi

    Entry nameiQ08CA3_DANRE
    AccessioniPrimary (citable) accession number: Q08CA3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2006
    Last sequence update: October 31, 2006
    Last modified: October 1, 2014
    This is version 61 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)