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Protein
Submitted name:

Zgc:153358

Gene

tfam

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Zgc:153358Imported
Submitted name:
Zgc:153358 proteinImported
Gene namesi
Name:tfamImported
Synonyms:zgc:153358Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-061013-552. tfam.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 29Sequence analysisAdd BLAST29
ChainiPRO_500842276530 – 277Sequence analysisAdd BLAST248

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000086442.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini47 – 115HMG box DNA-bindingInterPro annotationAdd BLAST69
Domaini152 – 216HMG box DNA-bindingInterPro annotationAdd BLAST65

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG0381. Eukaryota.
COG5648. LUCA.
HOGENOMiHOG000139423.
HOVERGENiHBG106674.
KOiK11830.

Family and domain databases

Gene3Di1.10.30.10. 2 hits.
InterProiIPR009071. HMG_box_dom.
[Graphical view]
PfamiPF00505. HMG_box. 2 hits.
[Graphical view]
SMARTiSM00398. HMG. 2 hits.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 2 hits.
PROSITEiPS50118. HMG_BOX_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q08BL2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPFSLMSVG ANLLVKSFSL FSSASVVRCS CVAPAIKSFS TATRGPPKRP
60 70 80 90 100
LTAYMTFVKD MQPTVSKQNP SIKSVDVMRK IAQQWKMLTT EQKQPFQVAS
110 120 130 140 150
LEAKEQYKLA LEKFKAQLTP AESAAFAEEK RQRVAKRKAI RKKKELNNLG
160 170 180 190 200
KPKRPRSTFN IFMAEHFVEA KGTTTQAKLK SLRDDWNRLS DTQKQMYIQL
210 220 230 240 250
AEDDKVRYKN EIKSWEEHMM EIGREDLLRR KTKSALKAKA KTKTIATKNR
260 270
KKTSKVTVIK AKAPKKKKDA SGKAVYF
Length:277
Mass (Da):31,527
Last modified:October 31, 2006 - v1
Checksum:iD19D12D9D2A247B8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC124667 mRNA. Translation: AAI24668.1.
BC165544 mRNA. Translation: AAI65544.1.
RefSeqiNP_001070857.1. NM_001077389.1.
UniGeneiDr.20000.

Genome annotation databases

GeneIDi571106.
KEGGidre:571106.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC124667 mRNA. Translation: AAI24668.1.
BC165544 mRNA. Translation: AAI65544.1.
RefSeqiNP_001070857.1. NM_001077389.1.
UniGeneiDr.20000.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000086442.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi571106.
KEGGidre:571106.

Organism-specific databases

CTDi7019.
ZFINiZDB-GENE-061013-552. tfam.

Phylogenomic databases

eggNOGiKOG0381. Eukaryota.
COG5648. LUCA.
HOGENOMiHOG000139423.
HOVERGENiHBG106674.
KOiK11830.

Family and domain databases

Gene3Di1.10.30.10. 2 hits.
InterProiIPR009071. HMG_box_dom.
[Graphical view]
PfamiPF00505. HMG_box. 2 hits.
[Graphical view]
SMARTiSM00398. HMG. 2 hits.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 2 hits.
PROSITEiPS50118. HMG_BOX_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ08BL2_DANRE
AccessioniPrimary (citable) accession number: Q08BL2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: November 2, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.