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Q08A45

- SYGA_SHEFN

UniProt

Q08A45 - SYGA_SHEFN

Protein

Glycine--tRNA ligase alpha subunit

Gene

glyQ

Organism
Shewanella frigidimarina (strain NCIMB 400)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (31 Oct 2006)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. glycine-tRNA ligase activity Source: UniProtKB-EC

    GO - Biological processi

    1. glycyl-tRNA aminoacylation Source: InterPro

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetase, Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciSFRI318167:GIXS-7-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glycine--tRNA ligase alpha subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
    Alternative name(s):
    Glycyl-tRNA synthetase alpha subunitUniRule annotation
    Short name:
    GlyRSUniRule annotation
    Gene namesi
    Name:glyQUniRule annotation
    Ordered Locus Names:Sfri_0007
    OrganismiShewanella frigidimarina (strain NCIMB 400)
    Taxonomic identifieri318167 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000000684: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 301301Glycine--tRNA ligase alpha subunitPRO_1000047486Add
    BLAST

    Interactioni

    Subunit structurei

    Tetramer of two alpha and two beta subunits.UniRule annotation

    Protein-protein interaction databases

    STRINGi318167.Sfri_0007.

    Structurei

    3D structure databases

    ProteinModelPortaliQ08A45.
    SMRiQ08A45. Positions 10-292.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0752.
    HOGENOMiHOG000264291.
    KOiK01878.
    OMAiIQPLDME.
    OrthoDBiEOG661H9S.

    Family and domain databases

    HAMAPiMF_00254. Gly_tRNA_synth_alpha.
    InterProiIPR006194. Gly-tRNA-synth_heterodimer.
    IPR002310. Gly-tRNA_ligase_asu.
    [Graphical view]
    PfamiPF02091. tRNA-synt_2e. 1 hit.
    [Graphical view]
    PRINTSiPR01044. TRNASYNTHGA.
    TIGRFAMsiTIGR00388. glyQ. 1 hit.
    PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q08A45-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTTKHDVKTF QGFILTLQEY WAQQGCAIVQ PLDMEVGAGT FHPQTFLRSL    50
    GPEPMSSAYV QPSRRPTDGR YGENPNRLQH YYQFQVVLKP SPDNIQELYL 100
    GSLEALGIDT KVHDIRFVED NWESPTLGAW GLGWEIWLNG MEVTQFTYFQ 150
    QVGGIECSPV TGEITYGLER LAMYIQEVDS VYDLVWTDGP LGRVTYGDIF 200
    HQNEVEQSTY NFEHADVDFM FTLFDQCEKM CMHLLSLEKP LPLPAYEQVM 250
    KASHAFNLLD ARHAISVTER QRYILRVRTM AKGVAESYYQ AREALGFPMC 300
    K 301
    Length:301
    Mass (Da):34,552
    Last modified:October 31, 2006 - v1
    Checksum:i0F1F8544C4BFC294
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000447 Genomic DNA. Translation: ABI69870.1.
    RefSeqiWP_011635499.1. NC_008345.1.
    YP_748708.1. NC_008345.1.

    Genome annotation databases

    EnsemblBacteriaiABI69870; ABI69870; Sfri_0007.
    GeneIDi4277690.
    KEGGisfr:Sfri_0007.
    PATRICi23493721. VBISheFri14343_0007.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000447 Genomic DNA. Translation: ABI69870.1 .
    RefSeqi WP_011635499.1. NC_008345.1.
    YP_748708.1. NC_008345.1.

    3D structure databases

    ProteinModelPortali Q08A45.
    SMRi Q08A45. Positions 10-292.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 318167.Sfri_0007.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABI69870 ; ABI69870 ; Sfri_0007 .
    GeneIDi 4277690.
    KEGGi sfr:Sfri_0007.
    PATRICi 23493721. VBISheFri14343_0007.

    Phylogenomic databases

    eggNOGi COG0752.
    HOGENOMi HOG000264291.
    KOi K01878.
    OMAi IQPLDME.
    OrthoDBi EOG661H9S.

    Enzyme and pathway databases

    BioCyci SFRI318167:GIXS-7-MONOMER.

    Family and domain databases

    HAMAPi MF_00254. Gly_tRNA_synth_alpha.
    InterProi IPR006194. Gly-tRNA-synth_heterodimer.
    IPR002310. Gly-tRNA_ligase_asu.
    [Graphical view ]
    Pfami PF02091. tRNA-synt_2e. 1 hit.
    [Graphical view ]
    PRINTSi PR01044. TRNASYNTHGA.
    TIGRFAMsi TIGR00388. glyQ. 1 hit.
    PROSITEi PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NCIMB 400.

    Entry informationi

    Entry nameiSYGA_SHEFN
    AccessioniPrimary (citable) accession number: Q08A45
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: October 31, 2006
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Aminoacyl-tRNA synthetases
      List of aminoacyl-tRNA synthetase entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3