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Protein

Protein PBDC1 homolog

Gene

YPL225W

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Miscellaneous

Present with 37500 molecules/cell in log phase SD medium.1 Publication

Enzyme and pathway databases

BioCyciYEAST:G3O-34114-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein PBDC1 homolog
Gene namesi
Ordered Locus Names:YPL225W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome XVI

Organism-specific databases

EuPathDBiFungiDB:YPL225W
SGDiS000006146 YPL225W

Subcellular locationi

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002421441 – 146Protein PBDC1 homologAdd BLAST146

Proteomic databases

MaxQBiQ08971
PaxDbiQ08971
PRIDEiQ08971

PTM databases

iPTMnetiQ08971

Interactioni

Protein-protein interaction databases

BioGridi35960, 104 interactors
IntActiQ08971, 1 interactor
MINTiQ08971
STRINGi4932.YPL225W

Structurei

Secondary structure

1146
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 6Combined sources3
Helixi12 – 36Combined sources25
Helixi48 – 58Combined sources11
Turni60 – 62Combined sources3
Helixi65 – 69Combined sources5
Turni74 – 76Combined sources3
Helixi79 – 92Combined sources14
Turni93 – 95Combined sources3
Beta strandi103 – 108Combined sources6
Beta strandi118 – 121Combined sources4
Helixi123 – 135Combined sources13
Turni136 – 139Combined sources4
Helixi140 – 142Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2JYNNMR-A1-146[»]
ProteinModelPortaliQ08971
SMRiQ08971
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ08971

Family & Domainsi

Sequence similaritiesi

Belongs to the PBDC1 family.Curated

Phylogenomic databases

GeneTreeiENSGT00390000016333
HOGENOMiHOG000189636
InParanoidiQ08971
OMAiFVPRMQF
OrthoDBiEOG092C5B1G

Family and domain databases

Gene3Di1.10.3560.10, 1 hit
InterProiView protein in InterPro
IPR023139 PBDC1-like_dom_sf
IPR008476 PBDC1_metazoa/fungi
IPR021148 Polysacc_synth_dom
PANTHERiPTHR13410 PTHR13410, 1 hit
PfamiView protein in Pfam
PF04669 Polysacc_synt_4, 1 hit

Sequencei

Sequence statusi: Complete.

Q08971-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTFNAETAD NLEDIEKQFA VVAVEQAETY WKLLTSVPGS KLRLTKFDDE
60 70 80 90 100
IYENFMERFP EYKDVERVKK FTEEELKTKE AKERWRKFFT IFEKKIEDYN
110 120 130 140
FGTLLRTDAS AEYGQFTTCF VVRLQFYAFE IARNKHGLND WIVGQK
Length:146
Mass (Da):17,445
Last modified:November 1, 1996 - v1
Checksum:i8A621FD74A720B3C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z73581 Genomic DNA Translation: CAA97940.1
AY692562 Genomic DNA Translation: AAT92581.1
BK006949 Genomic DNA Translation: DAA11211.1
PIRiS65244
RefSeqiNP_015099.1, NM_001184039.1

Genome annotation databases

EnsemblFungiiYPL225W; YPL225W; YPL225W
GeneIDi855876
KEGGisce:YPL225W

Similar proteinsi

Entry informationi

Entry nameiYP225_YEAST
AccessioniPrimary (citable) accession number: Q08971
Secondary accession number(s): D6W3E5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: November 1, 1996
Last modified: May 23, 2018
This is version 128 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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