Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein PBDC1 homolog

Gene

YPL225W

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciYEAST:G3O-34114-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein PBDC1 homolog
Gene namesi
Ordered Locus Names:YPL225W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome XVI

Organism-specific databases

EuPathDBiFungiDB:YPL225W.
SGDiS000006146. YPL225W.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002421441 – 146Protein PBDC1 homologAdd BLAST146

Proteomic databases

MaxQBiQ08971.
PRIDEiQ08971.

PTM databases

iPTMnetiQ08971.

Interactioni

Protein-protein interaction databases

BioGridi35960. 25 interactors.
IntActiQ08971. 1 interactor.
MINTiMINT-626750.

Structurei

Secondary structure

1146
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 6Combined sources3
Helixi12 – 36Combined sources25
Helixi48 – 58Combined sources11
Turni60 – 62Combined sources3
Helixi65 – 69Combined sources5
Turni74 – 76Combined sources3
Helixi79 – 92Combined sources14
Turni93 – 95Combined sources3
Beta strandi103 – 108Combined sources6
Beta strandi118 – 121Combined sources4
Helixi123 – 135Combined sources13
Turni136 – 139Combined sources4
Helixi140 – 142Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2JYNNMR-A1-146[»]
ProteinModelPortaliQ08971.
SMRiQ08971.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ08971.

Family & Domainsi

Sequence similaritiesi

Belongs to the PBDC1 family.Curated

Phylogenomic databases

GeneTreeiENSGT00390000016333.
HOGENOMiHOG000189636.
InParanoidiQ08971.
OMAiFVPRMQF.
OrthoDBiEOG092C5B1G.

Family and domain databases

Gene3Di1.10.3560.10. 1 hit.
InterProiIPR008476. PBDC1_metazoa/fungi.
IPR021148. Polysacc_synth_dom.
IPR023139. Yst0336-like_domain.
[Graphical view]
PANTHERiPTHR13410. PTHR13410. 1 hit.
PfamiPF04669. Polysacc_synt_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q08971-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTFNAETAD NLEDIEKQFA VVAVEQAETY WKLLTSVPGS KLRLTKFDDE
60 70 80 90 100
IYENFMERFP EYKDVERVKK FTEEELKTKE AKERWRKFFT IFEKKIEDYN
110 120 130 140
FGTLLRTDAS AEYGQFTTCF VVRLQFYAFE IARNKHGLND WIVGQK
Length:146
Mass (Da):17,445
Last modified:November 1, 1996 - v1
Checksum:i8A621FD74A720B3C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z73581 Genomic DNA. Translation: CAA97940.1.
AY692562 Genomic DNA. Translation: AAT92581.1.
BK006949 Genomic DNA. Translation: DAA11211.1.
PIRiS65244.
RefSeqiNP_015099.1. NM_001184039.1.

Genome annotation databases

EnsemblFungiiYPL225W; YPL225W; YPL225W.
GeneIDi855876.
KEGGisce:YPL225W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z73581 Genomic DNA. Translation: CAA97940.1.
AY692562 Genomic DNA. Translation: AAT92581.1.
BK006949 Genomic DNA. Translation: DAA11211.1.
PIRiS65244.
RefSeqiNP_015099.1. NM_001184039.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2JYNNMR-A1-146[»]
ProteinModelPortaliQ08971.
SMRiQ08971.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi35960. 25 interactors.
IntActiQ08971. 1 interactor.
MINTiMINT-626750.

PTM databases

iPTMnetiQ08971.

Proteomic databases

MaxQBiQ08971.
PRIDEiQ08971.

Protocols and materials databases

DNASUi855876.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYPL225W; YPL225W; YPL225W.
GeneIDi855876.
KEGGisce:YPL225W.

Organism-specific databases

EuPathDBiFungiDB:YPL225W.
SGDiS000006146. YPL225W.

Phylogenomic databases

GeneTreeiENSGT00390000016333.
HOGENOMiHOG000189636.
InParanoidiQ08971.
OMAiFVPRMQF.
OrthoDBiEOG092C5B1G.

Enzyme and pathway databases

BioCyciYEAST:G3O-34114-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ08971.
PROiQ08971.

Family and domain databases

Gene3Di1.10.3560.10. 1 hit.
InterProiIPR008476. PBDC1_metazoa/fungi.
IPR021148. Polysacc_synth_dom.
IPR023139. Yst0336-like_domain.
[Graphical view]
PANTHERiPTHR13410. PTHR13410. 1 hit.
PfamiPF04669. Polysacc_synt_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYP225_YEAST
AccessioniPrimary (citable) accession number: Q08971
Secondary accession number(s): D6W3E5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 37500 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome XVI
    Yeast (Saccharomyces cerevisiae) chromosome XVI: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.