Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q088S4 (Q088S4_SHEFN) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
DNA adenine methylase EMBL ABI70241.1
EC=2.1.1.72 EMBL ABI70241.1
Gene names
Ordered Locus Names:Sfri_0378
OrganismShewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI70241.1
Taxonomic identifier318167 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length278 AA.
Sequence statusComplete.
Protein existencePredicted

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Binding site111S-adenosyl-L-methionine By similarity PIRSR PIRSR000398-1
Binding site151S-adenosyl-L-methionine; via amide nitrogen By similarity PIRSR PIRSR000398-1
Binding site551S-adenosyl-L-methionine By similarity PIRSR PIRSR000398-1
Binding site1821S-adenosyl-L-methionine By similarity PIRSR PIRSR000398-1

Sequences

Sequence LengthMass (Da)Tools
Q088S4 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 11721032195F961B

FASTA27831,927
        10         20         30         40         50         60 
MIKKHRAFLK WAGGKYKLVD ELAKHLPAGN RLIEPFVGAG SVFLNTQFDD YLLCDINQDL 

        70         80         90        100        110        120 
INLYQIVQQQ PDKYIKAAKA MFVDEMNDKD AYYRVRAEFN LCSDPFIRSV YFLYMNRHGF 

       130        140        150        160        170        180 
NGLCRYNRKG GFNVPFGSYK KPYFPEAEIR YFSLKAQKAT FKCISYEQAF DMANSGDVIY 

       190        200        210        220        230        240 
CDPPYAPLST TASFTTYAGP GFSLDDQALL ARHSRLIAHE RNIPVLISNH DIPLTRELYR 

       250        260        270 
GASCSTISVQ RNISPKGGSR NKVDEIMALY DHHYREEE

« Hide

References

[1]"Complete sequence of Shewanella frigidimarina NCIMB 400."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. expand/collapse author list , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCIMB 400.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000447 Genomic DNA. Translation: ABI70241.1.
RefSeqYP_749079.1. NC_008345.1.

3D structure databases

ProteinModelPortalQ088S4.
SMRQ088S4. Positions 4-270.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ088S4.

Protein family/group databases

REBASE13529. M.SfrNDamP.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4278794.
GenomeReviewsGene locus Sfri_0378 in contig CP000447_GR.
KEGGsfr:Sfri_0378.
NMPDRfig|318167.10.peg.363.
PATRIC23494527. VBISheFri14343_0394.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0338.
HOGENOMHBG586381.
OMASDLINLY.
PhylomeDBQ088S4.
ProtClustDBCLSK905674.

Family and domain databases

InterProIPR023095. Ade_MeTrfase_dom_2.
IPR002052. DNA_methylase_N6_adenine_CS.
IPR012263. M_m6A_EcoRV.
IPR012327. MeTrfase_D12.
[Graphical view]
Gene3DG3DSA:1.10.1020.10. Ade_MeTrfase_dom_2. 1 hit.
KOK06223.
PfamPF02086. MethyltransfD12. 1 hit.
[Graphical view]
PIRSFPIRSF000398. M_m6A_EcoRV. 1 hit.
PRINTSPR00505. D12N6MTFRASE.
TIGRFAMsTIGR00571. Dam. 1 hit.
PROSITEPS00092. N6_MTASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ088S4_SHEFN
AccessionPrimary (citable) accession number: Q088S4
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info