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Q088N2 (Q088N2_SHEFN) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Ketol-acid reductoisomerase EMBL ABI70283.1
EC=1.1.1.86 EMBL ABI70283.1
Gene names
Ordered Locus Names:Sfri_0421
OrganismShewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI70283.1
Taxonomic identifier318167 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length493 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
Q088N2 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 44D86BA68806B0B2

FASTA49354,463
        10         20         30         40         50         60 
MANYFNSLNL RQQLAQLAQC RFMDRTEFSD GCQYIKDWNI VILGCGAQGL NQGLNMRDSG 

        70         80         90        100        110        120 
LNISFALRPQ AIAEKRASWQ KATDNGFKVG TFEELIPAAD LVLNLTPDKQ HTNVVNAVMP 

       130        140        150        160        170        180 
LMKQGATLSY SHGFNIVEEG MQVRPDITVV MVAPKCPATE VREEYKRGFG VPTLIAVHPE 

       190        200        210        220        230        240 
NDPNSDGLAI AKAYASATGG DRAGVLMSSF VAEVKSDLMG EQTILCGMLQ TGAILGYEKM 

       250        260        270        280        290        300 
VADGVEPGYA GKLIQQGWET VTEALKHGGI TNMMDRLSNP AKIKAFDMAE ELKVILKPLF 

       310        320        330        340        350        360 
EKHMDDIISG EFSRTMMEDW ANDDTNLLRW RAETNETAFE NAPVSSEHID EQTYFDKGIF 

       370        380        390        400        410        420 
LVAMIKAGVE LAFDTMVAAG IVEESAYYES LHETPLIANT IARKRLYEMN VVISDTAEYG 

       430        440        450        460        470        480 
CYLFNHAAVP MLRDYVNAMS SEYLGAGLKD QATGVDNLRL IDVNDQIRNT EVEFIGAELR 

       490 
GYMTDMKSIV EAS

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References

[1]"Complete sequence of Shewanella frigidimarina NCIMB 400."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. expand/collapse author list , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCIMB 400.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000447 Genomic DNA. Translation: ABI70283.1.
RefSeqYP_749121.1. NC_008345.1.

3D structure databases

ProteinModelPortalQ088N2.
SMRQ088N2. Positions 3-489.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ088N2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4277753.
GenomeReviewsGene locus Sfri_0421 in contig CP000447_GR.
KEGGsfr:Sfri_0421.
NMPDRfig|318167.10.peg.403.
PATRIC23494611. VBISheFri14343_0436.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0059.
HOGENOMHBG297205.
OMAEKHMDDI.
PhylomeDBQ088N2.
ProtClustDBPRK05225.

Family and domain databases

InterProIPR008927. 6-PGluconate_DH_C-like.
IPR013023. AcH_isomrdctse.
IPR000506. AcH_isomrdctse_C.
IPR013328. DH_multihelical.
IPR013116. IlvN.
IPR014359. KetolA_reductoisomerase_bac.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
Gene3DG3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
G3DSA:1.10.1040.10. Opine_DH. 1 hit.
KOK00053.
PANTHERPTHR21371. AcH_isomrdctse. 1 hit.
PTHR21371:SF2. PTHR21371:SF2. 1 hit.
PfamPF01450. IlvC. 2 hits.
PF07991. IlvN. 1 hit.
[Graphical view]
PIRSFPIRSF000116. IlvC_gammaproteo. 1 hit.
SUPFAMSSF48179. 6DGDH_C_like. 2 hits.
TIGRFAMsTIGR00465. IlvC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ088N2_SHEFN
AccessionPrimary (citable) accession number: Q088N2
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: January 25, 2012
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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