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Protein

HTH-type transcriptional regulator SyrM

Gene

syrM

Organism
Rhizobium etli
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Acts in trans to stimulate nod gene expression via nodD3 and exo gene expression via SyrA.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi58 – 77H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processNodulation, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator SyrM
Alternative name(s):
Symbiotic regulator
Gene namesi
Name:syrM
OrganismiRhizobium etli
Taxonomic identifieri29449 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057521 – 336HTH-type transcriptional regulator SyrMAdd BLAST336

Structurei

3D structure databases

ProteinModelPortaliQ08812.
SMRiQ08812.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 98HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Family and domain databases

CDDicd08467. PBP2_SyrM. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR037417. SyrM_PBP2.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR036388. WH-like_DNA-bd_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q08812-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNFMKRNVEK EVTDQLAYRR KMLQDWRGER LTGHQINLAS IDLNLLVALE
60 70 80 90 100
ALLEYRNVTH AGQHIGRSQP AMSRALGRLR GLFNDDLLVR SSTGLIPTPQ
110 120 130 140 150
GEHLAQRLPS ALRTIREMVT SRSVISKEWG RGATLAIPDH QALAVLPRLL
160 170 180 190 200
PWLRERAPHL DTLACLPFDR AVRGLEQGDI DLAVGHIDVQ LPGYFRRSLY
210 220 230 240 250
TDRFACLLRH GHPALAQEWT IDNFATLRHA AISTDSPDHF GPIYDHLPNL
260 270 280 290 300
RADRSPILFS SVLTAAVVAS ATDLVLLVPR RVATQVSAML PLRVVDPPLE
310 320 330
PAPYKVMLIW HERCHHDPQH KWLRKEVAAA LETGAD
Length:336
Mass (Da):37,801
Last modified:February 1, 1995 - v1
Checksum:iFACF9463A6A872BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z23013 Genomic DNA. Translation: CAA80556.1.

Similar proteinsi

Entry informationi

Entry nameiSYRM_RHIET
AccessioniPrimary (citable) accession number: Q08812
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: February 1, 1995
Last modified: January 31, 2018
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Strain CNPAF512 was originally thought to originate from R.leguminosarum bv phaseoli.Curated