Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q086Z3 (Q086Z3_SHEFN) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Alpha amylase, catalytic region EMBL ABI70672.1
Gene names
Ordered Locus Names:Sfri_0817
OrganismShewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI70672.1
Taxonomic identifier318167 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length599 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABI70672.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2222 Potential EMBL ABI70672.1
Chain23 – 599577 Potential EMBL ABI70672.1
PRO_5000130526

Sequences

Sequence LengthMass (Da)Tools
Q086Z3 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: A3E58FFBEFFC5384

FASTA59967,039
        10         20         30         40         50         60 
MNKTTWALLS AALVLSGCQQ AETEVVASAV QPLPQPSVQA DIYQDYLHRD VRDDIFYFVL 

        70         80         90        100        110        120 
PDRFYNGDSS NDNGSTSKPI SAGGFDTNSS RGFHGGDILG IEQKLDYLQN LGITAIWMTP 

       130        140        150        160        170        180 
LLRNKAIQSD GIAHHGYWIV DFTEIDPHFG SNADLKQLID SAHQRGIKVF FDIITNHTAD 

       190        200        210        220        230        240 
VIKYQECHQA SGEFIAPQTH CEYKSLAQVE KGDSYTPFVP QDQASVKVPD WLNDPRFYHN 

       250        260        270        280        290        300 
QGDSTFKGES SLNGDFSGLD DLNTADPEVV SGMVDIYQNL IKEFKPDGFR IDTVKHVDLS 

       310        320        330        340        350        360 
FWQTFSPEIV NFAKAQGIPQ FHVFGEVYDT NPNNLSVFTT QGKLPSVLDF AFQQTAADIF 

       370        380        390        400        410        420 
YRGKSPVLAQ QLFAQDSLYQ DDDSQADLLM TFLGNHDMGR TGYFINQAYP DVSSADKLQR 

       430        440        450        460        470        480 
SILSHAFMFL SRGIPVIYYG DEQGFTGDGN DIDAREDMFV SHVASYNDNI LLGTKATTAD 

       490        500        510        520        530        540 
DNFDPKHPLY QAIAQLSELR KQYPILRRGQ YQDRFYQADK DMFAFARVDP ETGAEFLMVF 

       550        560        570        580        590 
NSGEQAQTIN VTQEGKRYRL MTTWPDVVVP SIEDAAQAAS AELTVTLPRL SYAIYTTAS

« Hide

References

[1]"Complete sequence of Shewanella frigidimarina NCIMB 400."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. expand/collapse author list , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCIMB 400.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000447 Genomic DNA. Translation: ABI70672.1.
RefSeqYP_749510.1. NC_008345.1.

3D structure databases

ProteinModelPortalQ086Z3.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ086Z3.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4278770.
GenomeReviewsGene locus Sfri_0817 in contig CP000447_GR.
KEGGsfr:Sfri_0817.
NMPDRfig|318167.10.peg.776.
PATRIC23495473. VBISheFri14343_0845.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHBG400745.
OMAFHIFGEV.
ProtClustDBCLSK890899.

Family and domain databases

InterProIPR015902. Alpha_amylase.
IPR006046. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ086Z3_SHEFN
AccessionPrimary (citable) accession number: Q086Z3
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: January 25, 2012
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info