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Protein

Protein-arginine deiminase type-2

Gene

Padi2

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Catalyzes the deimination of arginine residues of proteins.

Catalytic activityi

Protein L-arginine + H2O = protein L-citrulline + NH3.

Cofactori

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Ligandi

Calcium

Enzyme and pathway databases

BRENDAi3.5.3.15. 3474.
ReactomeiR-MMU-3247509. Chromatin modifying enzymes.
R-MMU-6798695. Neutrophil degranulation.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein-arginine deiminase type-2 (EC:3.5.3.15)
Alternative name(s):
Peptidylarginine deiminase II
Protein-arginine deiminase type II
Gene namesi
Name:Padi2
Synonyms:Pad2, Pdi, Pdi2
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:1338892. Padi2.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

Pathology & Biotechi

Chemistry databases

ChEMBLiCHEMBL2321611.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002200271 – 673Protein-arginine deiminase type-2Add BLAST673

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-acetylmethionine1 Publication1
Modified residuei352Citrulline1 Publication1

Keywords - PTMi

Acetylation, Citrullination

Proteomic databases

EPDiQ08642.
MaxQBiQ08642.
PaxDbiQ08642.
PeptideAtlasiQ08642.
PRIDEiQ08642.

PTM databases

iPTMnetiQ08642.
PhosphoSitePlusiQ08642.

Expressioni

Tissue specificityi

Expressed in various tissues including muscle, uterus, spinal cord, salivary gland and pancreas.1 Publication

Developmental stagei

Expressed during the estrus cycle. Expressed during diestrus and proestrus with an eight fold decline when estrus cycle is reached.

Gene expression databases

BgeeiENSMUSG00000028927.
CleanExiMM_PADI2.
GenevisibleiQ08642. MM.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi202093. 1 interactor.
IntActiQ08642. 1 interactor.
MINTiMINT-4106481.
STRINGi10090.ENSMUSP00000030765.

Structurei

3D structure databases

ProteinModelPortaliQ08642.
SMRiQ08642.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the protein arginine deiminase family.Curated

Phylogenomic databases

eggNOGiENOG410IF3F. Eukaryota.
ENOG410ZKF3. LUCA.
GeneTreeiENSGT00390000008680.
HOGENOMiHOG000220908.
HOVERGENiHBG053016.
InParanoidiQ08642.
KOiK01481.
OMAiCLETHVR.
OrthoDBiEOG091G02QG.
TreeFamiTF331952.

Family and domain databases

InterProiIPR008972. Cupredoxin.
IPR004303. PAD.
IPR013530. PAD_C.
IPR013732. PAD_N.
IPR013733. Prot_Arg_deaminase_cen_dom.
[Graphical view]
PANTHERiPTHR10837. PTHR10837. 1 hit.
PfamiPF03068. PAD. 1 hit.
PF08527. PAD_M. 1 hit.
PF08526. PAD_N. 1 hit.
[Graphical view]
PIRSFiPIRSF001247. Protein-arginine_deiminase. 1 hit.
SUPFAMiSSF110083. SSF110083. 1 hit.
SSF49503. SSF49503. 1 hit.

Sequencei

Sequence statusi: Complete.

Q08642-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQPPIRENML RERTVRLQYG SRVEAVYVLG TQLWTDVYSA APAGAKTFSL
60 70 80 90 100
KHSEGVKVEV VRDGEAEEVV TNGKQRWALS PSSTLRLSMA QASTEASSDK
110 120 130 140 150
VTVNYYEEEG SAPIDQAGLF LTAIEISLDV DADRDGEVEK NNPKKASWTW
160 170 180 190 200
GPEGQGAILL VNCDRDTPWL PKEDCSDEKV YSKQDLQDMS QMILRTKGPD
210 220 230 240 250
RLPAGYEIVL YISMSDSDKV GVFYVENPFF GQRYIHILGR QKLYHVVKYT
260 270 280 290 300
GGSAELLFFV EGLCFPDESF SGLVSIHVSL LEYMAEGIPL TPIFTDTVMF
310 320 330 340 350
RIAPWIMTPN ILPPVSVFVC CMKDNYLFLK EVKNLVEKTN CELKVCFQYM
360 370 380 390 400
NRGDRWIQDE IEFGYIEAPH KGFPVVLDSP RDGNLKDFPI KQLLGPDFGY
410 420 430 440 450
VTREPLFETV TSLDSFGNLE VSPPVTVNGK EYPLGRILIG SSFPLSGGRR
460 470 480 490 500
MTKVVRDFLQ AQQVQAPVEL YSDWLTVGHV DEFMTFIPIP GKKEFRLLMA
510 520 530 540 550
STSACYQLFR EKQKAGHGEA VMFKGLGGMS SKRITINKIL SNESLTQENQ
560 570 580 590 600
YFQRCLDWNR DILKRELALT EKDIIDLPAL FKMDENHQAR AFFPNMVNMI
610 620 630 640 650
VLDKDLGIPK PFGPQVEEEC CLETHVRGLL EPLGLACTFI DDISAYHKFL
660 670
GEVHCGTNVR RKPFTFKWWH MVP
Length:673
Mass (Da):76,250
Last modified:July 27, 2011 - v2
Checksum:iF72A36079DA914E0
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti665T → A in BAA04012 (PubMed:8354274).Curated1
Sequence conflicti665T → A in AAH40350 (PubMed:15489334).Curated1
Sequence conflicti665T → A in AAH49947 (PubMed:15489334).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D16580 mRNA. Translation: BAA04012.1.
AB121692 Genomic DNA. Translation: BAD16624.1.
AL645625, AL807805 Genomic DNA. Translation: CAM16760.1.
AL807805, AL645625 Genomic DNA. Translation: CAM25735.1.
BC040350 mRNA. Translation: AAH40350.1.
BC049947 mRNA. Translation: AAH49947.1.
CCDSiCCDS18857.1.
PIRiS35038. DIMSR1.
RefSeqiNP_032838.2. NM_008812.2.
UniGeneiMm.2296.

Genome annotation databases

EnsembliENSMUST00000030765; ENSMUSP00000030765; ENSMUSG00000028927.
GeneIDi18600.
KEGGimmu:18600.
UCSCiuc008vni.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D16580 mRNA. Translation: BAA04012.1.
AB121692 Genomic DNA. Translation: BAD16624.1.
AL645625, AL807805 Genomic DNA. Translation: CAM16760.1.
AL807805, AL645625 Genomic DNA. Translation: CAM25735.1.
BC040350 mRNA. Translation: AAH40350.1.
BC049947 mRNA. Translation: AAH49947.1.
CCDSiCCDS18857.1.
PIRiS35038. DIMSR1.
RefSeqiNP_032838.2. NM_008812.2.
UniGeneiMm.2296.

3D structure databases

ProteinModelPortaliQ08642.
SMRiQ08642.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi202093. 1 interactor.
IntActiQ08642. 1 interactor.
MINTiMINT-4106481.
STRINGi10090.ENSMUSP00000030765.

Chemistry databases

ChEMBLiCHEMBL2321611.

PTM databases

iPTMnetiQ08642.
PhosphoSitePlusiQ08642.

Proteomic databases

EPDiQ08642.
MaxQBiQ08642.
PaxDbiQ08642.
PeptideAtlasiQ08642.
PRIDEiQ08642.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000030765; ENSMUSP00000030765; ENSMUSG00000028927.
GeneIDi18600.
KEGGimmu:18600.
UCSCiuc008vni.2. mouse.

Organism-specific databases

CTDi11240.
MGIiMGI:1338892. Padi2.

Phylogenomic databases

eggNOGiENOG410IF3F. Eukaryota.
ENOG410ZKF3. LUCA.
GeneTreeiENSGT00390000008680.
HOGENOMiHOG000220908.
HOVERGENiHBG053016.
InParanoidiQ08642.
KOiK01481.
OMAiCLETHVR.
OrthoDBiEOG091G02QG.
TreeFamiTF331952.

Enzyme and pathway databases

BRENDAi3.5.3.15. 3474.
ReactomeiR-MMU-3247509. Chromatin modifying enzymes.
R-MMU-6798695. Neutrophil degranulation.

Miscellaneous databases

PROiQ08642.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000028927.
CleanExiMM_PADI2.
GenevisibleiQ08642. MM.

Family and domain databases

InterProiIPR008972. Cupredoxin.
IPR004303. PAD.
IPR013530. PAD_C.
IPR013732. PAD_N.
IPR013733. Prot_Arg_deaminase_cen_dom.
[Graphical view]
PANTHERiPTHR10837. PTHR10837. 1 hit.
PfamiPF03068. PAD. 1 hit.
PF08527. PAD_M. 1 hit.
PF08526. PAD_N. 1 hit.
[Graphical view]
PIRSFiPIRSF001247. Protein-arginine_deiminase. 1 hit.
SUPFAMiSSF110083. SSF110083. 1 hit.
SSF49503. SSF49503. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiPADI2_MOUSE
AccessioniPrimary (citable) accession number: Q08642
Secondary accession number(s): Q75WD0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: July 27, 2011
Last modified: November 30, 2016
This is version 129 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.