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Q08630

- IRC13_YEAST

UniProt

Q08630 - IRC13_YEAST

Protein

Putative increased recombination centers protein 13

Gene

IRC13

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Protein uncertaini
  1. Functioni

    May be involved in a pathway contributing to genomic integrity.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative increased recombination centers protein 13
    Gene namesi
    Name:IRC13
    Ordered Locus Names:YOR235W
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome XV

    Organism-specific databases

    SGDiS000005761. IRC13.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane

    Pathology & Biotechi

    Disruption phenotypei

    Displays increased levels of spontaneous RAD52 foci in proliferating diploid cells.1 Publication

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 104104Putative increased recombination centers protein 13PRO_0000299728Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriQ08630.

    Interactioni

    Protein-protein interaction databases

    IntActiQ08630. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ08630.
    ModBaseiSearch...
    MobiDBiSearch...

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei63 – 8321HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    OrthoDBiEOG7TN074.

    Sequencei

    Sequence statusi: Complete.

    Q08630-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGLYRPSKFF HPPIPHIPFT INPDFFSFHI QRLKAKANPE NFLICFPPPD    50
    IYKGFVFCCQ LDLVHLFSYV FFLFLLKICV DVLQYVIYPK HFTHKKPGFE 100
    NYSI 104
    Length:104
    Mass (Da):12,390
    Last modified:November 1, 1996 - v1
    Checksum:i14DC6770979382DF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z75143 Genomic DNA. Translation: CAA99455.1.
    Z75144 Genomic DNA. Translation: CAA99457.1.
    BK006948 Genomic DNA. No translation available.
    PIRiS67128.

    Genome annotation databases

    EnsemblFungiiYOR235W; YOR235W; YOR235W.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z75143 Genomic DNA. Translation: CAA99455.1 .
    Z75144 Genomic DNA. Translation: CAA99457.1 .
    BK006948 Genomic DNA. No translation available.
    PIRi S67128.

    3D structure databases

    ProteinModelPortali Q08630.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q08630. 1 interaction.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YOR235W ; YOR235W ; YOR235W .

    Organism-specific databases

    SGDi S000005761. IRC13.

    Phylogenomic databases

    OrthoDBi EOG7TN074.

    Gene expression databases

    Genevestigatori Q08630.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XV."
      Dujon B., Albermann K., Aldea M., Alexandraki D., Ansorge W., Arino J., Benes V., Bohn C., Bolotin-Fukuhara M., Bordonne R., Boyer J., Camasses A., Casamayor A., Casas C., Cheret G., Cziepluch C., Daignan-Fornier B., Dang V.-D.
      , de Haan M., Delius H., Durand P., Fairhead C., Feldmann H., Gaillon L., Galisson F., Gamo F.-J., Gancedo C., Goffeau A., Goulding S.E., Grivell L.A., Habbig B., Hand N.J., Hani J., Hattenhorst U., Hebling U., Hernando Y., Herrero E., Heumann K., Hiesel R., Hilger F., Hofmann B., Hollenberg C.P., Hughes B., Jauniaux J.-C., Kalogeropoulos A., Katsoulou C., Kordes E., Lafuente M.J., Landt O., Louis E.J., Maarse A.C., Madania A., Mannhaupt G., Marck C., Martin R.P., Mewes H.-W., Michaux G., Paces V., Parle-McDermott A.G., Pearson B.M., Perrin A., Pettersson B., Poch O., Pohl T.M., Poirey R., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rechmann S., Schwager C., Schweizer M., Sor F., Sterky F., Tarassov I.A., Teodoru C., Tettelin H., Thierry A., Tobiasch E., Tzermia M., Uhlen M., Unseld M., Valens M., Vandenbol M., Vetter I., Vlcek C., Voet M., Volckaert G., Voss H., Wambutt R., Wedler H., Wiemann S., Winsor B., Wolfe K.H., Zollner A., Zumstein E., Kleine K.
      Nature 387:98-102(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. "Genome-wide analysis of Rad52 foci reveals diverse mechanisms impacting recombination."
      Alvaro D., Lisby M., Rothstein R.
      PLoS Genet. 3:E228-E228(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: DISRUPTION PHENOTYPE.

    Entry informationi

    Entry nameiIRC13_YEAST
    AccessioniPrimary (citable) accession number: Q08630
    Secondary accession number(s): O94149
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 11, 2007
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Caution

    Product of a dubious gene prediction. Partially overlaps small nucleolar RNA U3 (SNR17A).Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    2. Yeast chromosome XV
      Yeast (Saccharomyces cerevisiae) chromosome XV: entries and gene names

    External Data

    Dasty 3