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Reviewed, UniProtKB/Swiss-Prot Q08499 (PDE4D_HUMAN)

Last modified June 16, 2009. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (5) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    cAMP-specific 3',5'-cyclic phosphodiesterase 4D
    EC=3.1.4.17
Alternative name(s):
    DPDE3
    PDE43
Gene names
Name: PDE4D
Synonyms: DPDE3
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length809 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Regulates the levels of cAMP in the cell.

Catalytic activity

Adenosine 3',5'-cyclic phosphate + H2O = adenosine 5'-phosphate.

Cofactor

Binds 2 divalent metal cations per subunit. Site 1 may preferentially bind zinc ions, while site 2 has a preference for magnesium and/or manganese ions.

Enzyme regulation

Inhibited by rolipram. Activated by phosphatidic acid. Ref.13

Pathway

Purine metabolism; cAMP degradation; AMP from cAMP: step 1/1.

Subunit structure

Homodimer for the long isoforms. Isoforms with truncated N-termini are monomeric. Isoform 2 is part of a ternary complex containing PRKAR2A, PRKAR2B and AKAP9. Interacts with PDE4DIP By similarity. Isoform 5 binds GNB2L1 via its unique N-terminus. Binds ARRB2.

Subcellular location

Cytoplasm By similarity. Membrane By similarity. Cytoplasmcytoskeleton By similarity. Centrosome By similarity. Note: Found in the soluble fraction, associated with membranes, and associated with the cytoskeleton and the centrosome By similarity.

Tissue specificity

Widespread; most abundant in skeletal muscle. Isoform 8 is detected in brain. Isoform 9 is detected in brain, placenta, lung and kidney. Isoform 11 is detected in heart and skeletal muscle. Ref.6

Post-translational modification

Isoform 2 and isoform 11 are activated by phosphorylation (in vitro), but not isoform 8. Isoform 7 and isoform 12 are phosphorylated on Ser-49, Ser-51, Ser-55 and Ser-59. Ref.13 Ref.6 Ref.14 Ref.15 Ref.17 Ref.18 Ref.19 Ref.20

Involvement in disease

Genetic variations in PDE4D might be associated with susceptibility to stroke type 1 (STRK1) [MIM:606799]. A stroke is an acute neurologic event leading to death of neural tissue of the brain and resulting in loss of motor, sensory and/or cognitive function. Ref.16 states that association with stroke has to be considered with caution. Ref.7 Ref.16

Sequence similarities

Belongs to the cyclic nucleotide phosphodiesterase family.

Ontologies

Keywords
   Cellular componentCytoplasm
Cytoskeleton
Membrane
   Coding sequence diversityAlternative splicing
   LigandMetal-binding
cAMP
   Molecular functionHydrolase
   PTMPhosphoprotein
   Technical term3D-structure
Gene Ontology (GO)
   Biological processsignal transduction

Inferred from electronic annotation. Source: InterPro

   Cellular componentcentrosome

Inferred from electronic annotation. Source: UniProtKB-SubCell

insoluble fraction Ref.4

Traceable author statement. Source: ProtInc

membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

soluble fraction Ref.4

Traceable author statement. Source: ProtInc

   Molecular function3',5'-cyclic-AMP phosphodiesterase activity Ref.4

Traceable author statement. Source: ProtInc

metal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Alternative products

This entry describes 12 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q08499-1)

Also known as: hPDE4D4;

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q08499-2)

Also known as: hPDE4D3;

The sequence of this isoform differs from the canonical sequence as follows:
     1-152: MEAEGSSAPA...WPSSFQGLRR → MMHVNNFFRRHSWIC
Note: Activated by phosphorylation at Ser-53. Mutagenesis of Ser-53 abolishes activation.
Isoform 3 (identifier: Q08499-3)

The sequence of this isoform differs from the canonical sequence as follows:
     1-205: Missing.
Isoform 4 (identifier: Q08499-4)

Also known as: hPDE4D1;

The sequence of this isoform differs from the canonical sequence as follows:
     1-269: MEAEGSSAPA...QPSINKATIT → MKEQPSCAGT...TESPFPCLFA
Isoform 5 (identifier: Q08499-5)

Also known as: hPDE4D2;

The sequence of this isoform differs from the canonical sequence as follows:
     1-302: Missing.
Isoform 6 (identifier: Q08499-6)

Also known as: hPDE4D5;

The sequence of this isoform differs from the canonical sequence as follows:
     1-152: MEAEGSSAPA...WPSSFQGLRR → MAQQTSPDTL...QRRFTVAHTC
Note: Phosphorylated on Ser-59.
Isoform 7 (identifier: Q08499-7)

Also known as: PDE4DN3;

The sequence of this isoform differs from the canonical sequence as follows:
     1-152: MEAEGSSAPA...WPSSFQGLRR → MAQQTSPDTL...QRRFTVAHTC
     270-279: EEAYQKLASE → GLYNGIIAFL
     280-809: Missing.
Note: Phosphorylated on Ser-49, Ser-51, Ser-55 and Ser-59.
Isoform 8 (identifier: Q08499-8)

Also known as: PDE4D6;

The sequence of this isoform differs from the canonical sequence as follows:
     1-291: Missing.
     292-306: ETLQTRHSVSEMASN → MPEANYLLSVSWGYI
Isoform 9 (identifier: Q08499-9)

Also known as: PDE4D8;

The sequence of this isoform differs from the canonical sequence as follows:
     1-122: Missing.
     123-152: RTSYAVETGHRPGLKKSRMSWPSSFQGLRR → MAFVWDPLGATVPGPSTRAKSRLRFSKSYS
Isoform 10 (identifier: Q08499-10)

Also known as: PDE4D9;

The sequence of this isoform differs from the canonical sequence as follows:
     1-130: Missing.
     131-152: GHRPGLKKSRMSWPSSFQGLRR → MSIIMKPRSRSTSSLRTAEAVC
Isoform 11 (identifier: Q08499-11)

Also known as: PDE4D7;

The sequence of this isoform differs from the canonical sequence as follows:
     1-61: Missing.
     62-152: PPSPQPQPQC...WPSSFQGLRR → MKRNTCDLLS...IAITSAESSG
Isoform 12 (identifier: Q08499-12)

The sequence of this isoform differs from the canonical sequence as follows:
     1-152: MEAEGSSAPA...WPSSFQGLRR → MAQQTSPDTL...QRRFTVAHTC
     270-283: EEAYQKLASETLEE → GSWMELNPYTLLDM
     284-809: Missing.
Note: Phosphorylated on Ser-49, Ser-51, Ser-55 and Ser-59.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 809809cAMP-specific 3',5'-cyclic phosphodiesterase 4D
PRO_0000198814

Regions

Compositional bias42 – 8847Pro-rich

Sites

Metal binding4661Divalent metal cation 1
Metal binding5021Divalent metal cation 1
Metal binding5031Divalent metal cation 1
Metal binding5031Divalent metal cation 2
Metal binding6201Divalent metal cation 1
Binding site4621cAMP
Binding site6201cAMP
Binding site6231cAMP
Binding site6711cAMP

Amino acid modifications

Modified residue181Phosphoserine Ref.17 Ref.18
Modified residue201Phosphoserine Ref.13 Ref.14 Ref.18 Ref.20
Modified residue251Phosphothreonine Ref.17
Modified residue1971Phosphoserine Ref.15
Modified residue2021Phosphoserine Ref.15
Modified residue3481Phosphoserine Ref.19

Natural variations

Alternative sequence1 – 302302Missing in isoform 5.
VSP_004580
Alternative sequence1 – 291291Missing in isoform 8.
VSP_012383
Alternative sequence1 – 269269MEAEG…KATIT → MKEQPSCAGTGHPMAGYGRM APFELASGPVKRLRTESPFP CLFA in isoform 4.
VSP_004579
Alternative sequence1 – 205205Missing in isoform 3.
VSP_004578
Alternative sequence1 – 152152MEAEG…QGLRR → MMHVNNFFRRHSWIC in isoform 2.
VSP_004577
Alternative sequence1 – 152152MEAEG…QGLRR → MAQQTSPDTLTVPEVDNPHC PNPWLNEDLVKSLRENLLQH EKSKTARKSVSPKLSPVISP RNSPRLLRRMLLSSNIPKQR RFTVAHTC in isoform 6, isoform 7 and isoform 12.
VSP_012384
Alternative sequence1 – 130130Missing in isoform 10.
VSP_012385
Alternative sequence1 – 122122Missing in isoform 9.
VSP_012386
Alternative sequence1 – 6161Missing in isoform 11.
VSP_012387
Alternative sequence62 – 15291PPSPQ…QGLRR → MKRNTCDLLSRSKSASEETL HSSNEEEDPFRGMEPYLVRR LSCRNIQLPPLAFRQLEQAD LKSESENIQRPTSLPLKILP LIAITSAESSG in isoform 11.
VSP_012388
Alternative sequence123 – 15230RTSYA…QGLRR → MAFVWDPLGATVPGPSTRAK SRLRFSKSYS in isoform 9.
VSP_012389
Alternative sequence131 – 15222GHRPG…QGLRR → MSIIMKPRSRSTSSLRTAEA VC in isoform 10.
VSP_012390
Alternative sequence270 – 28314EEAYQ…ETLEE → GSWMELNPYTLLDM in isoform 12.
VSP_023326
Alternative sequence270 – 27910EEAYQKLASE → GLYNGIIAFL in isoform 7.
VSP_012391
Alternative sequence280 – 809530Missing in isoform 7.
VSP_012392
Alternative sequence284 – 809526Missing in isoform 12.
VSP_023327
Alternative sequence292 – 30615ETLQT…EMASN → MPEANYLLSVSWGYI in isoform 8.
VSP_012393

Experimental info

Mutagenesis5271D → R: Abolishes homodimerization. Ref.21
Mutagenesis5631R → D: Abolishes homodimerization. Ref.21
Sequence conflict5101S → F in AAH36319. Ref.10
Sequence conflict5491D → G in AAN10119. Ref.6
Sequence conflict6441R → P Ref.2
Sequence conflict7691C → R in AAA97890. Ref.3
Sequence conflict7691C → R in AAA97891. Ref.3
Sequence conflict7691C → R in AAA97892. Ref.3

Secondary structure

................................................. 809
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 (hPDE4D4) [UniParc].

Last modified December 1, 2000. Version 2.
Checksum: 7A4773DD3A044F57

FASTA80991,115
        10         20         30         40         50         60 
MEAEGSSAPA RAGSGEGSDS AGGATLKAPK HLWRHEQHHQ YPLRQPQFRL LHPHHHLPPP 

        70         80         90        100        110        120 
PPPSPQPQPQ CPLQPPPPPP LPPPPPPPGA ARGRYASSGA TGRVRHRGYS DTERYLYCRA 

       130        140        150        160        170        180 
MDRTSYAVET GHRPGLKKSR MSWPSSFQGL RRFDVDNGTS AGRSPLDPMT SPGSGLILQA 

       190        200        210        220        230        240 
NFVHSQRRES FLYRSDSDYD LSPKSMSRNS SIASDIHGDD LIVTPFAQVL ASLRTVRNNF 

       250        260        270        280        290        300 
AALTNLQDRA PSKRSPMCNQ PSINKATITE EAYQKLASET LEELDWCLDQ LETLQTRHSV 

       310        320        330        340        350        360 
SEMASNKFKR MLNRELTHLS EMSRSGNQVS EFISNTFLDK QHEVEIPSPT QKEKEKKKRP 

       370        380        390        400        410        420 
MSQISGVKKL MHSSSLTNSS IPRFGVKTEQ EDVLAKELED VNKWGLHVFR IAELSGNRPL 

       430        440        450        460        470        480 
TVIMHTIFQE RDLLKTFKIP VDTLITYLMT LEDHYHADVA YHNNIHAADV VQSTHVLLST 

       490        500        510        520        530        540 
PALEAVFTDL EILAAIFASA IHDVDHPGVS NQFLINTNSE LALMYNDSSV LENHHLAVGF 

       550        560        570        580        590        600 
KLLQEENCDI FQNLTKKQRQ SLRKMVIDIV LATDMSKHMN LLADLKTMVE TKKVTSSGVL 

       610        620        630        640        650        660 
LLDNYSDRIQ VLQNMVHCAD LSNPTKPLQL YRQWTDRIME EFFRQGDRER ERGMEISPMC 

       670        680        690        700        710        720 
DKHNASVEKS QVGFIDYIVH PLWETWADLV HPDAQDILDT LEDNREWYQS TIPQSPSPAP 

       730        740        750        760        770        780 
DDPEEGRQGQ TEKFQFELTL EEDGESDTEK DSGSQVEEDT SCSDSKTLCT QDSESTEIPL 

       790        800 
DEQVEEEAVG EEEESQPEAC VIDDRSPDT 

« Hide

Isoform 2 (hPDE4D3).

Checksum: 24174F02715A412A
Show »

FASTA67276,369
Isoform 3.

Checksum: 446D0C31C86399AB
Show »

FASTA60468,607
Isoform 4 (hPDE4D1).

Checksum: C1761886FF962102
Show »

FASTA58466,376
Isoform 5 (hPDE4D2).

Checksum: 6C07C949952EE5DF
Show »

FASTA50757,792
Isoform 6 (hPDE4D5).

Checksum: D136AE2B7132DAAC
Show »

FASTA74584,428
Isoform 7 (PDE4DN3).

Checksum: 255EF7985DB75353
Show »

FASTA21523,839
Isoform 8 (PDE4D6).

Checksum: 069F18EB90BAAF4B
Show »

FASTA51859,113
Isoform 9 (PDE4D8).

Checksum: 90B1ED110D7ED77C
Show »

FASTA68777,705
Isoform 10 (PDE4D9).

Checksum: D35B0A2D975C5705
Show »

FASTA67976,816
Isoform 11 (PDE4D7).

Checksum: D10CF5036B1EA7C8
Show »

FASTA74884,662
Isoform 12.

Checksum: 04C84B400D6F7D2C
Show »

FASTA21924,429

References

« Hide 'large scale' references
[1]"A family of human phosphodiesterases homologous to the dunce learning and memory gene product of Drosophila melanogaster are potential targets for antidepressant drugs."
Bolger G., Michaeli T., Martins T., St John T., Steiner B., Rodgers L., Riggs M., Wigler M., Ferguson K.
Mol. Cell. Biol. 13:6558-6571(1993) [PubMed: 8413254] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2).
[2]"Identification of cyclic AMP-phosphodiesterase variants from the PDE4D gene expressed in human peripheral mononuclear cells."
Nemoz G., Zhang R.B., Sette C., Conti M.
FEBS Lett. 384:97-102(1996) [PubMed: 8797812] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 4 AND 5).
[3]"Isolation of a cDNA encoding a human rolipram-sensitive cyclic AMP phosphodiesterase (PDE IVD)."
Baecker P.A., Obernolte R., Bach C., Yee C., Shelton E.R.
Gene 138:253-256(1994) [PubMed: 8125310] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3).
Tissue: Heart.
[4]"Characterization of five different proteins produced by alternatively spliced mRNAs from the human cAMP-specific phosphodiesterase PDE4D gene."
Bolger G.B., Erdogan S., Jones R.E., Loughney K., Scotland G., Hoffmann R., Wilkinson I., Farrell C., Houslay M.D.
Biochem. J. 328:539-548(1997) [PubMed: 9371713] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2; 3; 4; 5 AND 6), SEQUENCE REVISION (ISOFORM 1).
[5]"Phosphodiesterases 4D and 7A splice variants in the response of HUVEC cells to TNF-alpha1."
Miro X., Casacuberta J.M., Gutierrez-Lopez M.D., Landazuri M.O., Puigdomenech P.
Biochem. Biophys. Res. Commun. 274:415-421(2000) [PubMed: 10913353] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 7), ALTERNATIVE SPLICING.
Tissue: Umbilical vein endothelial cell.
[6]"Cloning and characterization of novel PDE4D isoforms PDE4D6 and PDE4D7."
Wang D., Deng C., Bugaj-Gaweda B., Kwan M., Gunwaldsen C., Leonard C., Xin X., Hu Y., Unterbeck A., De Vivo M.
Cell. Signal. 15:883-891(2003) [PubMed: 12834813] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 8; 9; 10 AND 11), PHOSPHORYLATION, TISSUE SPECIFICITY.
[7]"The gene encoding phosphodiesterase 4D confers risk of ischemic stroke."
Gretarsdottir S., Thorleifsson G., Reynisdottir S.T., Manolescu A., Jonsdottir S., Jonsdottir T., Gudmundsdottir T., Bjarnadottir S.M., Einarsson O.B., Gudjonsdottir H.M., Hawkins M., Gudmundsson G., Gudmundsdottir H., Andrason H., Gudmundsdottir A.S., Sigurdardottir M., Chou T.T., Nahmias J. expand/collapse author list , Goss S., Sveinbjoernsdottir S., Valdimarsson E.M., Jakobsson F., Agnarsson U., Gudnason V., Thorgeirsson G., Fingerle J., Gurney M., Gudbjartsson D., Frigge M.L., Kong A., Stefansson K., Gulcher J.R.
Nat. Genet. 35:131-138(2003) [PubMed: 14517540] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 10 AND 11), INVOLVEMENT IN SUSCEPTIBILITY TO STRK1.
[8]Erratum
Gretarsdottir S., Thorleifsson G., Reynisdottir S.T., Manolescu A., Jonsdottir S., Jonsdottir T., Gudmundsdottir T., Bjarnadottir S.M., Einarsson O.B., Gudjonsdottir H.M., Hawkins M., Gudmundsson G., Gudmundsdottir H., Andrason H., Gudmundsdottir A.S., Sigurdardottir M., Chou T.T., Nahmias J. expand/collapse author list , Goss S., Sveinbjoernsdottir S., Valdimarsson E.M., Jakobsson F., Agnarsson U., Gudnason V., Thorgeirsson G., Fingerle J., Gurney M., Gudbjartsson D., Frigge M.L., Kong A., Stefansson K., Gulcher J.R.
Nat. Genet. 37:555-555(2005)
[9]"Cloning of human full-length CDSs in BD Creator(TM) system donor vector."
Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A.
Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 12).
[10]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 8 AND 12).
Tissue: Brain and Testis.
[11]"Delineation of RAID1, the RACK1 interaction domain located within the unique N-terminal region of the cAMP-specific phosphodiesterase, PDE4D5."
Bolger G.B., McCahill A., Yarwood S.J., Steele M.S., Warwicker J., Houslay M.D.
BMC Biochem. 3:24-24(2002) [PubMed: 12193273] [Abstract]
Cited for: INTERACTION WITH GNB2L1.
[12]"The unique amino-terminal region of the PDE4D5 cAMP phosphodiesterase isoform confers preferential interaction with beta-arrestins."
Bolger G.B., McCahill A., Huston E., Cheung Y.F., McSorley T., Baillie G.S., Houslay M.D.
J. Biol. Chem. 278:49230-49238(2003) [PubMed: 14500724] [Abstract]
Cited for: INTERACTION WITH ARRB2, SUBCELLULAR LOCATION.
[13]"The oligomerization state determines regulatory properties and inhibitor sensitivity of type 4 cAMP-specific phosphodiesterases."
Richter W., Conti M.
J. Biol. Chem. 279:30338-30348(2004) [PubMed: 15131123] [Abstract]
Cited for: HOMODIMERIZATION OF LONG ISOFORMS, ENZYME REGULATION BY ROLIPRAM AND PHOSPHATIDIC ACID, PHOSPHORYLATION AT SER-53 (ISOFORM 2).
[14]"Global, in vivo, and site-specific phosphorylation dynamics in signaling networks."
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M.
Cell 127:635-648(2006) [PubMed: 17081983] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-49; SER-51; SER-55 AND SER-59 (ISOFORMS 7/12), MASS SPECTROMETRY.
Tissue: Epithelium.
[15]"A probability-based approach for high-throughput protein phosphorylation analysis and site localization."
Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P.
Nat. Biotechnol. 24:1285-1292(2006) [PubMed: 16964243] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-197 AND SER-202, MASS SPECTROMETRY.
Tissue: Epithelium.
[16]"Many hypotheses but no replication for the association between PDE4D and stroke."
Rosand J., Bayley N., Rost N., de Bakker P.I.W.
Nat. Genet. 38:1091-1092(2006) [PubMed: 17006457] [Abstract]
Cited for: POSSIBLE INVOLVEMENT IN SUSCEPTIBILITY TO STRK1.
[17]"Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra."
Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D.
J. Proteome Res. 6:4150-4162(2007) [PubMed: 17924679] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-18 AND THR-25, MASS SPECTROMETRY.
Tissue: Epithelium.
[18]"Phosphoproteome of resting human platelets."
Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A.
J. Proteome Res. 7:526-534(2008) [PubMed: 18088087] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-18 AND SER-20, MASS SPECTROMETRY.
Tissue: Platelet.
[19]"Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle."
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.
Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-348, MASS SPECTROMETRY.
[20]"A quantitative atlas of mitotic phosphorylation."
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-59 (ISOFORM 6/7/12), MASS SPECTROMETRY.
[21]"Crystal structure of phosphodiesterase 4D and inhibitor complex."
Lee M.E., Markowitz J., Lee J.-O., Lee H.
FEBS Lett. 530:53-58(2002) [PubMed: 12387865] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS) OF 388-715 IN COMPLEX WITH THE INHIBITOR ZARDAVERINE AND DIVALENT METAL IONS, MUTAGENESIS OF ASP-527 AND ARG-563.
[22]"The crystal structure of AMP-bound PDE4 suggests a mechanism for phosphodiesterase catalysis."
Huai Q., Colicelli J., Ke H.
Biochemistry 42:13220-13226(2003) [PubMed: 14609333] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF 381-739 IN COMPLEX WITH CAMP AND DIVALENT METAL IONS.
[23]"Three-dimensional structures of PDE4D in complex with roliprams and implication on inhibitor selectivity."
Huai Q., Wang H., Sun Y., Kim H.Y., Liu Y., Ke H.
Structure 11:865-873(2003) [PubMed: 12842049] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF 381-739 IN COMPLEX WITH INHIBITOR.
[24]"Crystal structures of phosphodiesterases 4 and 5 in complex with inhibitor 3-isobutyl-1-methylxanthine suggest a conformation determinant of inhibitor selectivity."
Huai Q., Liu Y., Francis S.H., Corbin J.D., Ke H.
J. Biol. Chem. 279:13095-13101(2004) [PubMed: 14668322] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF 381-714 IN COMPLEX WITH METAL IONS AND INHIBITOR.
[25]"Crystal structures of the catalytic domain of phosphodiesterase 4B complexed with AMP, 8-Br-AMP, and rolipram."
Xu R.X., Rocque W.J., Lambert M.H., Vanderwall D.E., Luther M.A., Nolte R.T.
J. Mol. Biol. 337:355-365(2004) [PubMed: 15003452] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF 380-756 IN COMPLEX WITH AMP; METAL IONS AND THE INHIBITOR ROLIPRAM.
+Additional computationally mapped references.

Cross-references

Sequence databases

L20970 mRNA. Translation: AAA03592.1.
L20969 mRNA. Translation: AAC00042.1.
U02882 mRNA. Translation: AAC13745.1.
U50157 mRNA. Translation: AAA97890.1.
U50158 mRNA. Translation: AAA97891.1.
U50159 mRNA. Translation: AAA97892.1.
AF012074 mRNA. Translation: AAC00070.1.
AF012073 mRNA. Translation: AAC00069.1.
AJ250854 mRNA. Translation: CAC03757.1.
AF536975 mRNA. Translation: AAN10117.1.
AF536976 mRNA. Translation: AAN10118.1.
AF536977 mRNA. Translation: AAN10119.1.
AY388960 mRNA. Translation: AAQ90404.1.
AY245866 mRNA. Translation: AAP75760.1.
AY245867 mRNA. Translation: AAP75761.1.
BT007398 mRNA. Translation: AAP36062.1.
BC008390 mRNA. Translation: AAH08390.1.
BC036319 mRNA. Translation: AAH36319.1.
IPIIPI00002449.
IPI00217565.
IPI00217567.
IPI00375233.
IPI00375235.
IPI00375236.
IPI00386765.
IPI00478370.
IPI00514112.
IPI00514183.
IPI00514643.
IPI00828158.
PIRI61358.
RefSeqNP_001098101.1.
NP_006194.2.
UniGeneHs.117545

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1E9KNMR-A155-157[»]
1MKDX-ray2.90A/B/C/D/E/F/G/H/I/J/K/L388-715[»]
1OYNX-ray2.00A/B/C/D381-740[»]
1PTWX-ray2.30A/B/C/D381-740[»]
1Q9MX-ray2.30A/B/C/D381-740[»]
1TB7X-ray1.63A/B388-715[»]
1TBBX-ray1.60A/B388-715[»]
1XOMX-ray1.55A/B388-715[»]
1XONX-ray1.72A/B388-715[»]
1XOQX-ray1.83A/B388-715[»]
1XORX-ray1.54A/B388-715[»]
1Y2BX-ray1.40A/B388-715[»]
1Y2CX-ray1.67A/B388-715[»]
1Y2DX-ray1.70A/B388-715[»]
1Y2EX-ray2.10A/B388-715[»]
1Y2KX-ray1.36A/B388-715[»]
1ZKNX-ray2.10A/B/C/D381-714[»]
2FM0X-ray2.00A/B/C/D381-741[»]
2FM5X-ray2.03A/B/C/D381-741[»]
2PW3X-ray1.56A/B388-714[»]
2QYNX-ray1.57A/B388-715[»]
ModBaseSearch...

PTM databases

PhosphoSiteQ08499.

Proteomic databases

PRIDEQ08499.

Genome annotation databases

EnsemblENSG00000113448. Homo sapiens. [Contig view]
GeneID5144.
KEGGhsa:5144.

Organism-specific databases

GeneCardsGC05M058302.
H-InvDBHIX0024990.
HIX0057518.
HGNCHGNC:8783. PDE4D.
MIM600129. gene.
606799. phenotype.
PharmGKBPA33130.
GenAtlasSearch...

Phylogenomic databases

HOVERGENQ08499.
OMAQ08499. IMEEFFS.

Enzyme and pathway databases

BRENDA3.1.4.17. 247.

Gene expression databases

ArrayExpressQ08499.
BgeeQ08499.
GermOnlineENSG00000113448. Homo sapiens.

Family and domain databases

InterProIPR003607. Met-dep_phosphohydro_HD.
IPR002073. PDEase.
[Graphical view]
PfamPF00233. PDEase_I. 1 hit.
[Graphical view]
PRINTSPR00387. PDIESTERASE1.
SMARTSM00471. HDc. 1 hit.
[Graphical view]
PROSITEPS00126. PDEASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

DrugBankDB00131. Adenosine monophosphate.
DB00651. Dyphylline.
NextBio19846.
SOURCESearch...

Entry information

Entry namePDE4D_HUMAN
AccessionPrimary (citable) accession number: Q08499
Secondary accession number(s): O43433 expand/collapse secondary AC list , Q13549, Q13550, Q13551, Q7Z2L8, Q8IV84, Q8IVA9, Q8IVD2, Q8IVD3, Q96HL4, Q9HCX7
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: December 1, 2000
Last modified: June 16, 2009
This is version 102 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)

Relevant documents

Human chromosome 5

Human chromosome 5: entries, gene names and cross-references to MIM

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PATHWAY comments

Index of metabolic and biosynthesis pathways

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents