Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q083U3 (Q083U3_SHEFN) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Cystathionine beta-lyase EMBL ABI71472.1
EC=4.4.1.8 EMBL ABI71472.1
Gene names
Ordered Locus Names:Sfri_1621
OrganismShewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI71472.1
Taxonomic identifier318167 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLyase EMBL ABI71472.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcellular amino acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular functioncystathionine beta-lyase activity

Inferred from electronic annotation. Source: EC

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q083U3 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 53595E2DC99AFC86

FASTA39643,854
        10         20         30         40         50         60 
MSKDDKLATQ IVSVGREKKF TKGIINPPVF RASTVVFDTM DEMRFAIKNK TNGEMFYGRR 

        70         80         90        100        110        120 
GTPTHFSFQQ AICELEGGAG TALYSSGAGA ISSALLSFLK SGDHLLMVDT AYEPTRDLCN 

       130        140        150        160        170        180 
KMLAGFGIET TYYDPMIGAG IRELIRPNTK VLFLESPGSI TMEVQDVPTL SRIAHEHDVI 

       190        200        210        220        230        240 
VMLDNTWASP INSRPFDMGV DISIQAATKY IVGHSDVMMG TATANEQHWE QLRENSYLMG 

       250        260        270        280        290        300 
QTTSPDDVYL AARGLRTLGV RMAQHNKNAL KVANWLVTRA EVDHVRHPAF DTCPGHEFFK 

       310        320        330        340        350        360 
RDFSSGNGLF SFVLKQGDLA SVTAFVENMD HFKMGFSWGG FESLILGVFG INNIRTATQW 

       370        380        390 
DSSKPLIRLH IGLEDADDLI ADLDAAFSRY NAILQK

« Hide

References

[1]"Complete sequence of Shewanella frigidimarina NCIMB 400."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. expand/collapse author list , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCIMB 400.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000447 Genomic DNA. Translation: ABI71472.1.
RefSeqYP_750310.1. NC_008345.1.

3D structure databases

ProteinModelPortalQ083U3.
SMRQ083U3. Positions 6-389.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ083U3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4277280.
GenomeReviewsGene locus Sfri_1621 in contig CP000447_GR.
KEGGsfr:Sfri_1621.
NMPDRfig|318167.10.peg.1564.
PATRIC23497185. VBISheFri14343_1680.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0626.
HOGENOMHBG754729.
OMAREQSYLM.
PhylomeDBQ083U3.
ProtClustDBPRK09028.

Family and domain databases

InterProIPR000277. Cys/Met-Metab_PyrdxlP-dep_enz.
IPR006233. Cys_b_lyase_bac.
IPR015424. PyrdxlP-dep_Trfase_major_dom.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
Gene3DG3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit.
G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KOK01760.
PANTHERPTHR11808:SF8. Cys_b_lyase_bac. 1 hit.
PTHR11808. Cys_Met_Meta_PP. 1 hit.
PfamPF01053. Cys_Met_Meta_PP. 1 hit.
[Graphical view]
PIRSFPIRSF001434. CGS. 1 hit.
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITEPS00868. CYS_MET_METAB_PP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ083U3_SHEFN
AccessionPrimary (citable) accession number: Q083U3
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: January 25, 2012
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info