Q082M3 (Q082M3_SHEFN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Choline dehydrogenase EMBL ABI71792.1
EC=1.1.99.1 EMBL ABI71792.1

Gene names

Ordered Locus Names:

Sfri_1946

Organism

Shewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI71792.1

Taxonomic identifier

318167 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	560 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS007867

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533
Molecular function	Oxidoreductase SAAS SAAS007867 EMBL ABI71792.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q082M3 [UniParc]. Last modified October 31, 2006. Version 1. Checksum: 4A7CA3A29A6B8E98	FASTA	560	61,831
	10 20 30 40 50 60 MSNEYDYIIV GAGSAGCVLA NRLTENPDNK VLILETGGSD KSIFIQMPTA LSIPMNTKKY 70 80 90 100 110 120 AWQFETEAEP HLDNRRMHCP RGKVLGGSSS INGMVYVRGH ARDFDEWQQQ GAKDWDYAHC 130 140 150 160 170 180 LPYFKKAETW SFGGNVYRGD KGPLAVNNGN EMKNPLYQAF VDAGVDAGYL ATDDYNASQQ 190 200 210 220 230 240 EGFGPMHMTV KNGVRWSTAN AYLRPAMKRP NLTVVTHALV HKVIMQGKTA VGVRYERKGE 250 260 270 280 290 300 LIDVNCNKEV ILSAGSIGSP HILQLSGIGD SSTLANAGIE QVHQLPGVGQ NLQDHLEFYF 310 320 330 340 350 360 QFKCLKPISL NGKIDPLNKL FIGARWILNK SGLGATNHFE SCGFIRSKAG LEWPDLQYHF 370 380 390 400 410 420 LPAAMRYDGK EAFAGHGFQV HIGHNKPKSR GAVTVVSNDA KVAPQIQFNY LSHQDDIEGF 430 440 450 460 470 480 RACVRLTREI INQPGLDEYR GEEIQPGLAI QTDEEIDRFV RSSVESAYHP SCSCKMGEDE 490 500 510 520 530 540 MAVVDSETKV HGINGLRVVD SSIFPTIPNG NLNSPTIMVA ERAADIILGN KPLAPSLAKV 550 560 TIAKQWQTSQ RLQAPKRQID

References

[1]

"Complete sequence of Shewanella frigidimarina NCIMB 400." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NCIMB 400.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000447 Genomic DNA. Translation: ABI71792.1.
RefSeq	YP_750630.1. NC_008345.1.
3D structure databases
ProteinModelPortal	Q082M3.
ModBase	Search...
Protein-protein interaction databases
STRING	Q082M3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4278858.
GenomeReviews	Gene locus Sfri_1946 in contig CP000447_GR.
KEGG	sfr:Sfri_1946.
NMPDR	fig|318167.10.peg.1882.
PATRIC	23497883. VBISheFri14343_2022.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2303.
HOGENOM	HBG734713.
OMA	HMTVKNG.
PhylomeDB	Q082M3.
ProtClustDB	PRK02106.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q082M3_SHEFN

Accession

Primary (citable) accession number: Q082M3

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2006
Last sequence update:	October 31, 2006
Last modified:	January 25, 2012
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)