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Protein
Submitted name:

Putative orphan protein

Gene

Sfri_1973

Organism
Shewanella frigidimarina (strain NCIMB 400)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciSFRI318167:GIXS-2045-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative orphan proteinImported
Gene namesi
Ordered Locus Names:Sfri_1973Imported
OrganismiShewanella frigidimarina (strain NCIMB 400)Imported
Taxonomic identifieri318167 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000000684 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi318167.Sfri_1973.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3BB9X-ray1.80A/B/C/D/E/F1-147[»]
ProteinModelPortaliQ082J6.
SMRiQ082J6. Positions 23-147.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ082J6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini34 – 147114Cyclase_SnoaL-like_domInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4109043. Bacteria.
ENOG41128X7. LUCA.
HOGENOMiHOG000002784.
OMAiIVHIHWS.
OrthoDBiEOG6MD955.

Family and domain databases

Gene3Di3.10.450.50. 1 hit.
InterProiIPR009959. Cyclase_SnoaL-like_dom.
IPR032710. NTF2-like_dom.
[Graphical view]
PfamiPF13474. SnoaL_3. 1 hit.
[Graphical view]
SUPFAMiSSF54427. SSF54427. 1 hit.

Sequencei

Sequence statusi: Complete.

Q082J6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAGQSSLSF AHGDETHPIE QKAFIGVDSA AGNVVKQFHA ALQMGNEAIV
60 70 80 90 100
RQSLAANVQI YEGGKVERSL TEYANHHMLA DMAYLKGLTI TPKEHQITIT
110 120 130 140
GDIAISTSIS HAQGEYKGKS IDSMTMETLV LIKQADGRWK ITHVHWS
Length:147
Mass (Da):16,032
Last modified:October 31, 2006 - v1
Checksum:i1D08EAD5F885EBA5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000447 Genomic DNA. Translation: ABI71819.1.
RefSeqiWP_011637434.1. NC_008345.1.

Genome annotation databases

EnsemblBacteriaiABI71819; ABI71819; Sfri_1973.
KEGGisfr:Sfri_1973.
PATRICi23497937. VBISheFri14343_2049.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000447 Genomic DNA. Translation: ABI71819.1.
RefSeqiWP_011637434.1. NC_008345.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3BB9X-ray1.80A/B/C/D/E/F1-147[»]
ProteinModelPortaliQ082J6.
SMRiQ082J6. Positions 23-147.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi318167.Sfri_1973.

Protocols and materials databases

DNASUi4278885.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABI71819; ABI71819; Sfri_1973.
KEGGisfr:Sfri_1973.
PATRICi23497937. VBISheFri14343_2049.

Phylogenomic databases

eggNOGiENOG4109043. Bacteria.
ENOG41128X7. LUCA.
HOGENOMiHOG000002784.
OMAiIVHIHWS.
OrthoDBiEOG6MD955.

Enzyme and pathway databases

BioCyciSFRI318167:GIXS-2045-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ082J6.

Family and domain databases

Gene3Di3.10.450.50. 1 hit.
InterProiIPR009959. Cyclase_SnoaL-like_dom.
IPR032710. NTF2-like_dom.
[Graphical view]
PfamiPF13474. SnoaL_3. 1 hit.
[Graphical view]
SUPFAMiSSF54427. SSF54427. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NCIMB 400Imported.
  2. "Crystal structure of putative ketosteroid isomerase (YP_750657.1) from Shewanella frigidimarina NCIMB 400 at 1.80 A resolution."
    Joint Center for Structural Genomics (JCSG)
    Submitted (NOV-2007) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS).

Entry informationi

Entry nameiQ082J6_SHEFN
AccessioniPrimary (citable) accession number: Q082J6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: April 13, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.