Putative orphan protein - Shewanella frigidimarina (strain NCIMB 400)

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Q082J6 (Q082J6_SHEFN) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 33. History...

Clusters with 100%, 90%, 50% identity |

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Putative orphan protein EMBL ABI71819.1

Gene names

Ordered Locus Names:

Sfri_1973

Organism

Shewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI71819.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella ›

Protein attributes

Sequence length	147 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 3BB9 Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence

Length

Mass (Da)

Tools

Q082J6 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 1D08EAD5F885EBA5
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147

16,032

        10         20         30         40         50         60 
MSAGQSSLSF AHGDETHPIE QKAFIGVDSA AGNVVKQFHA ALQMGNEAIV RQSLAANVQI 

        70         80         90        100        110        120 
YEGGKVERSL TEYANHHMLA DMAYLKGLTI TPKEHQITIT GDIAISTSIS HAQGEYKGKS 

       130        140 
IDSMTMETLV LIKQADGRWK ITHVHWS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of Shewanella frigidimarina NCIMB 400." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NCIMB 400.
[2]	"Crystal structure of putative ketosteroid isomerase (YP_750657.1) from Shewanella frigidimarina NCIMB 400 at 1.80 A resolution." Joint Center for Structural Genomics (JCSG) Submitted (NOV-2007) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000447 Genomic DNA. Translation: ABI71819.1.

RefSeq

YP_750657.1. NC_008345.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3BB9	X-ray	1.80	A/B/C/D/E/F	1-147	[»]

ProteinModelPortal

SMR

Q082J6. Positions 23-147.

ModBase

Protein-protein interaction databases

STRING

318167.Sfri_1973.

Protocols and materials databases

DNASU

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABI71819; ABI71819; Sfri_1973.

GeneID

KEGG

PATRIC

23497937. VBISheFri14343_2049.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

SFRI318167:GIXS-2045-MONOMER.

Family and domain databases

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

Q082J6_SHEFN

Accession

Primary (citable) accession number: Q082J6

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2006
Last sequence update:	October 31, 2006
Last modified:	May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info