Q082I1 (Q082I1_SHEFN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Lytic transglycosylase, catalytic EMBL ABI71834.1

Gene names

Ordered Locus Names:

Sfri_1988

Organism

Shewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI71834.1

Taxonomic identifier

318167 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	474 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABI71834.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro peptidoglycan metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	membrane Inferred from electronic annotation. Source: InterPro
Molecular function	lytic transglycosylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 23	23	Potential EMBL ABI71834.1
	Chain	24 – 474	451	Potential EMBL ABI71834.1		PRO_5000130772

Sequences

	Sequence		Length	Mass (Da)
	Q082I1 [UniParc]. Last modified October 31, 2006. Version 1. Checksum: CAF7A57DD470C4A9	FASTA	474	53,425
	10 20 30 40 50 60 MRASIFLIAT GFILLSGCQT VAVEDVEAEK SLNGVNKLTS LKVPKLLARR NYQDSGDVWE 70 80 90 100 110 120 RIRYSMDMPI PDQQLVNQYR DWYINNPQHL EQISQRAKPF LYLIVQEFEH RDLPIELALL 130 140 150 160 170 180 PMVESSFNPF AYSSADASGL WQFTSPMASH FGLEMNWWYD GRRDVPAATT AALDMLEYLY 190 200 210 220 230 240 KKTDNWLYAL AAYNAGEGRL REAIRYNEAR GLSTDFWSLP LPKETRQYVP QLLAIADVIK 250 260 270 280 290 300 HSESYGISLK SIPNKPLVEV IDVGSQIDIA VAADLANISI ARLQKLNPGF NRWATSPDGP 310 320 330 340 350 360 HQLIVPVSKV SGFKQALADT DISARVKWFK YQIRAGDNIS VIAKRHLTTV SEIKAMNDIN 370 380 390 400 410 420 GDKIVAGQFL YMPQGVSSMT PEVELASTNT AQVSSKKQAA PNKQPRIVST SNQPAVRSDH 430 440 450 460 470 TVKYGDTLWS IAKVYKVSVE QIIAWNKMTD KDKLTVGKTL QFYQQPFQQQ QTQL

References

[1]

"Complete sequence of Shewanella frigidimarina NCIMB 400." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NCIMB 400.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000447 Genomic DNA. Translation: ABI71834.1.
RefSeq	YP_750672.1. NC_008345.1.
3D structure databases
ProteinModelPortal	Q082I1.
ModBase	Search...
Protein-protein interaction databases
STRING	Q082I1.
Protein family/group databases
CAZy	CBM50. Carbohydrate-Binding Module Family 50. GH23. Glycoside Hydrolase Family 23.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4278900.
GenomeReviews	Gene locus Sfri_1988 in contig CP000447_GR.
KEGG	sfr:Sfri_1988.
NMPDR	fig|318167.10.peg.1922.
PATRIC	23497969. VBISheFri14343_2065.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0741.
HOGENOM	HBG519241.
OMA	SLYLHYI.
PhylomeDB	Q082I1.
ProtClustDB	CLSK773952.
Family and domain databases
InterPro	IPR023346. Lysozyme-like_dom. IPR008258. Lytic_TGlycosylase-like_cat. IPR018392. Peptidoglycan-bd_lysin. IPR002482. Peptidoglycan-bd_Lysin_subgr. IPR000189. Transglyc_AS. [Graphical view]
KO	K08307.
Pfam	PF01476. LysM. 2 hits. PF01464. SLT. 1 hit. [Graphical view]
SMART	SM00257. LysM. 2 hits. [Graphical view]
SUPFAM	SSF53955. SSF53955. 1 hit.
PROSITE	PS00922. TRANSGLYCOSYLASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q082I1_SHEFN

Accession

Primary (citable) accession number: Q082I1

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2006
Last sequence update:	October 31, 2006
Last modified:	December 14, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)