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Q08298

- RD22_ARATH

UniProt

Q08298 - RD22_ARATH

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Protein
Dehydration-responsive protein RD22
Gene
RD22, At5g25610, T14C9.150
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. response to salt stress Source: TAIR
Complete GO annotation...

Keywords - Biological processi

Stress response

Names & Taxonomyi

Protein namesi
Recommended name:
Dehydration-responsive protein RD22
Gene namesi
Name:RD22
Ordered Locus Names:At5g25610
ORF Names:T14C9.150
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G25610.

Subcellular locationi

GO - Cellular componenti

  1. Golgi apparatus Source: TAIR
  2. endosome Source: TAIR
  3. trans-Golgi network Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222 Reviewed prediction
Add
BLAST
Chaini23 – 392370Dehydration-responsive protein RD22
PRO_0000022202Add
BLAST

Proteomic databases

PaxDbiQ08298.
PRIDEiQ08298.

Expressioni

Tissue specificityi

Seed.

Developmental stagei

Expressed during the early and middle stages of seed development.

Inductioni

By dehydration, salt stress and abscisic acid (ABA).

Gene expression databases

ArrayExpressiQ08298.
GenevestigatoriQ08298.

Interactioni

Protein-protein interaction databases

MINTiMINT-8066540.
STRINGi3702.AT5G25610.1-P.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati57 – 75191
Add
BLAST
Repeati78 – 97202
Add
BLAST
Repeati100 – 120213
Add
BLAST
Repeati125 – 142184
Add
BLAST
Repeati145 – 164205
Add
BLAST
Domaini176 – 392217BURP
Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni57 – 1641085 X approximate repeats
Add
BLAST

Sequence similaritiesi

Contains 1 BURP domain.

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiNOG244743.
HOGENOMiHOG000238251.
InParanoidiQ08298.
OMAiVVWTRSG.
PhylomeDBiQ08298.

Family and domain databases

InterProiIPR004873. BURP_dom.
[Graphical view]
PfamiPF03181. BURP. 1 hit.
[Graphical view]
SMARTiSM01045. BURP. 1 hit.
[Graphical view]
PROSITEiPS51277. BURP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q08298-1 [UniParc]FASTAAdd to Basket

« Hide

MAIRLPLICL LGSFMVVAIA ADLTPERYWS TALPNTPIPN SLHNLLTFDF    50
TDEKSTNVQV GKGGVNVNTH KGKTGSGTAV NVGKGGVRVD TGKGKPGGGT 100
HVSVGSGKGH GGGVAVHTGK PGKRTDVGVG KGGVTVHTRH KGRPIYVGVK 150
PGANPFVYNY AAKETQLHDD PNAALFFLEK DLVRGKEMNV RFNAEDGYGG 200
KTAFLPRGEA ETVPFGSEKF SETLKRFSVE AGSEEAEMMK KTIEECEARK 250
VSGEEKYCAT SLESMVDFSV SKLGKYHVRA VSTEVAKKNA PMQKYKIAAA 300
GVKKLSDDKS VVCHKQKYPF AVFYCHKAMM TTVYAVPLEG ENGMRAKAVA 350
VCHKNTSAWN PNHLAFKVLK VKPGTVPVCH FLPETHVVWF SY 392
Length:392
Mass (Da):42,260
Last modified:November 1, 1995 - v1
Checksum:i511A76D8C59225B3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D10703 Genomic DNA. Translation: BAA01546.1.
AC006601 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED93472.1.
AY090244 mRNA. Translation: AAL90908.1.
AY060560 mRNA. Translation: AAL31189.1.
BT009697 mRNA. Translation: AAP88331.1.
PIRiS34823.
RefSeqiNP_197943.1. NM_122472.3.
UniGeneiAt.23701.

Genome annotation databases

EnsemblPlantsiAT5G25610.1; AT5G25610.1; AT5G25610.
GeneIDi832636.
KEGGiath:AT5G25610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D10703 Genomic DNA. Translation: BAA01546.1 .
AC006601 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED93472.1 .
AY090244 mRNA. Translation: AAL90908.1 .
AY060560 mRNA. Translation: AAL31189.1 .
BT009697 mRNA. Translation: AAP88331.1 .
PIRi S34823.
RefSeqi NP_197943.1. NM_122472.3.
UniGenei At.23701.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

MINTi MINT-8066540.
STRINGi 3702.AT5G25610.1-P.

Proteomic databases

PaxDbi Q08298.
PRIDEi Q08298.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT5G25610.1 ; AT5G25610.1 ; AT5G25610 .
GeneIDi 832636.
KEGGi ath:AT5G25610.

Organism-specific databases

TAIRi AT5G25610.

Phylogenomic databases

eggNOGi NOG244743.
HOGENOMi HOG000238251.
InParanoidi Q08298.
OMAi VVWTRSG.
PhylomeDBi Q08298.

Gene expression databases

ArrayExpressi Q08298.
Genevestigatori Q08298.

Family and domain databases

InterProi IPR004873. BURP_dom.
[Graphical view ]
Pfami PF03181. BURP. 1 hit.
[Graphical view ]
SMARTi SM01045. BURP. 1 hit.
[Graphical view ]
PROSITEi PS51277. BURP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The plant hormone abscisic acid mediates the drought-induced expression but not the seed-specific expression of rd22, a gene responsive to dehydration stress in Arabidopsis thaliana."
    Yamaguchi-Shinozaki K., Shinozaki K.
    Mol. Gen. Genet. 238:17-25(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
    Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
    , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
    Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.

Entry informationi

Entry nameiRD22_ARATH
AccessioniPrimary (citable) accession number: Q08298
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: May 14, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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