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Q08298

- RD22_ARATH

UniProt

Q08298 - RD22_ARATH

Protein

Dehydration-responsive protein RD22

Gene

RD22

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 88 (01 Oct 2014)
      Sequence version 1 (01 Nov 1995)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. response to salt stress Source: TAIR

    Keywords - Biological processi

    Stress response

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Dehydration-responsive protein RD22
    Gene namesi
    Name:RD22
    Ordered Locus Names:At5g25610
    ORF Names:T14C9.150
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G25610.

    Subcellular locationi

    GO - Cellular componenti

    1. endosome Source: TAIR
    2. Golgi apparatus Source: TAIR
    3. trans-Golgi network Source: TAIR

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2222Sequence AnalysisAdd
    BLAST
    Chaini23 – 392370Dehydration-responsive protein RD22PRO_0000022202Add
    BLAST

    Proteomic databases

    PaxDbiQ08298.
    PRIDEiQ08298.

    Expressioni

    Tissue specificityi

    Seed.

    Developmental stagei

    Expressed during the early and middle stages of seed development.

    Inductioni

    By dehydration, salt stress and abscisic acid (ABA).

    Gene expression databases

    ArrayExpressiQ08298.
    GenevestigatoriQ08298.

    Interactioni

    Protein-protein interaction databases

    MINTiMINT-8066540.
    STRINGi3702.AT5G25610.1-P.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati57 – 75191Add
    BLAST
    Repeati78 – 97202Add
    BLAST
    Repeati100 – 120213Add
    BLAST
    Repeati125 – 142184Add
    BLAST
    Repeati145 – 164205Add
    BLAST
    Domaini176 – 392217BURPPROSITE-ProRule annotationAdd
    BLAST

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni57 – 1641085 X approximate repeatsAdd
    BLAST

    Sequence similaritiesi

    Contains 1 BURP domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat, Signal

    Phylogenomic databases

    eggNOGiNOG244743.
    HOGENOMiHOG000238251.
    InParanoidiQ08298.
    OMAiVVWTRSG.
    PhylomeDBiQ08298.

    Family and domain databases

    InterProiIPR004873. BURP_dom.
    [Graphical view]
    PfamiPF03181. BURP. 1 hit.
    [Graphical view]
    SMARTiSM01045. BURP. 1 hit.
    [Graphical view]
    PROSITEiPS51277. BURP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q08298-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAIRLPLICL LGSFMVVAIA ADLTPERYWS TALPNTPIPN SLHNLLTFDF    50
    TDEKSTNVQV GKGGVNVNTH KGKTGSGTAV NVGKGGVRVD TGKGKPGGGT 100
    HVSVGSGKGH GGGVAVHTGK PGKRTDVGVG KGGVTVHTRH KGRPIYVGVK 150
    PGANPFVYNY AAKETQLHDD PNAALFFLEK DLVRGKEMNV RFNAEDGYGG 200
    KTAFLPRGEA ETVPFGSEKF SETLKRFSVE AGSEEAEMMK KTIEECEARK 250
    VSGEEKYCAT SLESMVDFSV SKLGKYHVRA VSTEVAKKNA PMQKYKIAAA 300
    GVKKLSDDKS VVCHKQKYPF AVFYCHKAMM TTVYAVPLEG ENGMRAKAVA 350
    VCHKNTSAWN PNHLAFKVLK VKPGTVPVCH FLPETHVVWF SY 392
    Length:392
    Mass (Da):42,260
    Last modified:November 1, 1995 - v1
    Checksum:i511A76D8C59225B3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D10703 Genomic DNA. Translation: BAA01546.1.
    AC006601 Genomic DNA. No translation available.
    CP002688 Genomic DNA. Translation: AED93472.1.
    AY090244 mRNA. Translation: AAL90908.1.
    AY060560 mRNA. Translation: AAL31189.1.
    BT009697 mRNA. Translation: AAP88331.1.
    PIRiS34823.
    RefSeqiNP_197943.1. NM_122472.3.
    UniGeneiAt.23701.

    Genome annotation databases

    EnsemblPlantsiAT5G25610.1; AT5G25610.1; AT5G25610.
    GeneIDi832636.
    KEGGiath:AT5G25610.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D10703 Genomic DNA. Translation: BAA01546.1 .
    AC006601 Genomic DNA. No translation available.
    CP002688 Genomic DNA. Translation: AED93472.1 .
    AY090244 mRNA. Translation: AAL90908.1 .
    AY060560 mRNA. Translation: AAL31189.1 .
    BT009697 mRNA. Translation: AAP88331.1 .
    PIRi S34823.
    RefSeqi NP_197943.1. NM_122472.3.
    UniGenei At.23701.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    MINTi MINT-8066540.
    STRINGi 3702.AT5G25610.1-P.

    Proteomic databases

    PaxDbi Q08298.
    PRIDEi Q08298.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G25610.1 ; AT5G25610.1 ; AT5G25610 .
    GeneIDi 832636.
    KEGGi ath:AT5G25610.

    Organism-specific databases

    TAIRi AT5G25610.

    Phylogenomic databases

    eggNOGi NOG244743.
    HOGENOMi HOG000238251.
    InParanoidi Q08298.
    OMAi VVWTRSG.
    PhylomeDBi Q08298.

    Gene expression databases

    ArrayExpressi Q08298.
    Genevestigatori Q08298.

    Family and domain databases

    InterProi IPR004873. BURP_dom.
    [Graphical view ]
    Pfami PF03181. BURP. 1 hit.
    [Graphical view ]
    SMARTi SM01045. BURP. 1 hit.
    [Graphical view ]
    PROSITEi PS51277. BURP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The plant hormone abscisic acid mediates the drought-induced expression but not the seed-specific expression of rd22, a gene responsive to dehydration stress in Arabidopsis thaliana."
      Yamaguchi-Shinozaki K., Shinozaki K.
      Mol. Gen. Genet. 238:17-25(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: cv. Columbia.
    2. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
      Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
      , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
      Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.

    Entry informationi

    Entry nameiRD22_ARATH
    AccessioniPrimary (citable) accession number: Q08298
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1995
    Last sequence update: November 1, 1995
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3