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Q08298 (RD22_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 87. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Dehydration-responsive protein RD22
Gene names
Name:RD22
Ordered Locus Names:At5g25610
ORF Names:T14C9.150
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length392 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Tissue specificity

Seed.

Developmental stage

Expressed during the early and middle stages of seed development.

Induction

By dehydration, salt stress and abscisic acid (ABA).

Sequence similarities

Contains 1 BURP domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2222 Potential
Chain23 – 392370Dehydration-responsive protein RD22
PRO_0000022202

Regions

Repeat57 – 75191
Repeat78 – 97202
Repeat100 – 120213
Repeat125 – 142184
Repeat145 – 164205
Domain176 – 392217BURP
Region57 – 1641085 X approximate repeats

Sequences

Sequence LengthMass (Da)Tools
Q08298 [UniParc].

Last modified November 1, 1995. Version 1.
Checksum: 511A76D8C59225B3

FASTA39242,260
        10         20         30         40         50         60 
MAIRLPLICL LGSFMVVAIA ADLTPERYWS TALPNTPIPN SLHNLLTFDF TDEKSTNVQV 

        70         80         90        100        110        120 
GKGGVNVNTH KGKTGSGTAV NVGKGGVRVD TGKGKPGGGT HVSVGSGKGH GGGVAVHTGK 

       130        140        150        160        170        180 
PGKRTDVGVG KGGVTVHTRH KGRPIYVGVK PGANPFVYNY AAKETQLHDD PNAALFFLEK 

       190        200        210        220        230        240 
DLVRGKEMNV RFNAEDGYGG KTAFLPRGEA ETVPFGSEKF SETLKRFSVE AGSEEAEMMK 

       250        260        270        280        290        300 
KTIEECEARK VSGEEKYCAT SLESMVDFSV SKLGKYHVRA VSTEVAKKNA PMQKYKIAAA 

       310        320        330        340        350        360 
GVKKLSDDKS VVCHKQKYPF AVFYCHKAMM TTVYAVPLEG ENGMRAKAVA VCHKNTSAWN 

       370        380        390 
PNHLAFKVLK VKPGTVPVCH FLPETHVVWF SY 

« Hide

References

« Hide 'large scale' references
[1]"The plant hormone abscisic acid mediates the drought-induced expression but not the seed-specific expression of rd22, a gene responsive to dehydration stress in Arabidopsis thaliana."
Yamaguchi-Shinozaki K., Shinozaki K.
Mol. Gen. Genet. 238:17-25(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: cv. Columbia.
[2]"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. expand/collapse author list , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D10703 Genomic DNA. Translation: BAA01546.1.
AC006601 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED93472.1.
AY090244 mRNA. Translation: AAL90908.1.
AY060560 mRNA. Translation: AAL31189.1.
BT009697 mRNA. Translation: AAP88331.1.
PIRS34823.
RefSeqNP_197943.1. NM_122472.3.
UniGeneAt.23701.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

MINTMINT-8066540.
STRING3702.AT5G25610.1-P.

Proteomic databases

PaxDbQ08298.
PRIDEQ08298.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G25610.1; AT5G25610.1; AT5G25610.
GeneID832636.
KEGGath:AT5G25610.

Organism-specific databases

TAIRAT5G25610.

Phylogenomic databases

eggNOGNOG244743.
HOGENOMHOG000238251.
InParanoidQ08298.
OMAVVWTRSG.
PhylomeDBQ08298.

Gene expression databases

ArrayExpressQ08298.
GenevestigatorQ08298.

Family and domain databases

InterProIPR004873. BURP_dom.
[Graphical view]
PfamPF03181. BURP. 1 hit.
[Graphical view]
SMARTSM01045. BURP. 1 hit.
[Graphical view]
PROSITEPS51277. BURP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRD22_ARATH
AccessionPrimary (citable) accession number: Q08298
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: May 14, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names