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Q081Q4

- GLGB_SHEFN

UniProt

Q081Q4 - GLGB_SHEFN

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Shewanella frigidimarina (strain NCIMB 400)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 63 (01 Oct 2014)
      Sequence version 1 (31 Oct 2006)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei415 – 4151NucleophileUniRule annotation
    Active sitei468 – 4681Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciSFRI318167:GIXS-2240-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiCBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
    Alpha-(1->4)-glucan branching enzymeUniRule annotation
    Glycogen branching enzymeUniRule annotation
    Short name:
    BEUniRule annotation
    Gene namesi
    Name:glgBUniRule annotation
    Ordered Locus Names:Sfri_2165
    OrganismiShewanella frigidimarina (strain NCIMB 400)
    Taxonomic identifieri318167 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000000684: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7447441,4-alpha-glucan branching enzyme GlgBPRO_0000260698Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi318167.Sfri_2165.

    Structurei

    3D structure databases

    ProteinModelPortaliQ081Q4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    KOiK00700.
    OMAiAKLLFMG.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q081Q4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTVATPYFQQ GSEIALLNGE YTDVFSLLGM HSVNDGKALV VRCLIPGAIS    50
    VDVLSAKDGR KVATLEQVNE HGLFAGKMGR RVKSFAYLLR VQYPLCEQLI 100
    NDPYQFDSLL NPDDVYLFGE GSQLQTYHFQ GANWREHHGV KGVHFCVWAP 150
    NAKQVAVMGD FNLWDNKRHI LRHHPASGLW DIFIAEVEPE QHYKYAISDM 200
    HGNQVIKSDP YAVAMQPSPH NASKIPHVER YDWQDSQWLA DRASHQPHVQ 250
    PMSIYEVQLA SWRRKGDDSQ EYTDYSQLIA ELVPYIKEMG FTHLQLMPIS 300
    EYPFDGSWGY QPVGLFAPTY RFGDANGLRA FIDECHQQGI AVLLDWVPAH 350
    FPRDPHGLVR FDGSCLYEHD DPRKGEQPDW DTLIYNYGRA EVRSFLYSNA 400
    HYWLDEFHFD GLRLDAVSSM LYLDYSRRAD QWIPNKFGGR ENLEAISFLQ 450
    ELNARMYQCF PGINMIAEES TAWPGVTQAT SNNGLGFGFK WNMGWMNDTL 500
    RYISCDPLFR RYHHGELTFS LVYAFTEQFI LSLSHDEVVH GKGSLLHKIP 550
    GDDWQKFATL RAYYGFMWTH PGKKLLFMGN EFAQRNEWNH NQSLDWHLLT 600
    YAPHQGVQDW VRDLNQCYQQ YPALYQRDHH SDGFQWLDCN NADNNILVFC 650
    RFGMDKQQHV VIVVNMSPQV YYDFRVGVPT AQNYRELLNS DHRHYGGGDV 700
    VNDNPCEAQV TPWQGMSHSI VITVPPLGCS IWVPELDEQD QPTQ 744
    Length:744
    Mass (Da):85,845
    Last modified:October 31, 2006 - v1
    Checksum:iC6F3490C64FA7E99
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000447 Genomic DNA. Translation: ABI72011.1.
    RefSeqiWP_011637621.1. NC_008345.1.
    YP_750849.1. NC_008345.1.

    Genome annotation databases

    EnsemblBacteriaiABI72011; ABI72011; Sfri_2165.
    GeneIDi4279077.
    KEGGisfr:Sfri_2165.
    PATRICi23498343. VBISheFri14343_2249.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000447 Genomic DNA. Translation: ABI72011.1 .
    RefSeqi WP_011637621.1. NC_008345.1.
    YP_750849.1. NC_008345.1.

    3D structure databases

    ProteinModelPortali Q081Q4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 318167.Sfri_2165.

    Protein family/group databases

    CAZyi CBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABI72011 ; ABI72011 ; Sfri_2165 .
    GeneIDi 4279077.
    KEGGi sfr:Sfri_2165.
    PATRICi 23498343. VBISheFri14343_2249.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    KOi K00700.
    OMAi AKLLFMG.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci SFRI318167:GIXS-2240-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NCIMB 400.

    Entry informationi

    Entry nameiGLGB_SHEFN
    AccessioniPrimary (citable) accession number: Q081Q4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: October 31, 2006
    Last modified: October 1, 2014
    This is version 63 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3