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Q081Q4

- GLGB_SHEFN

UniProt

Q081Q4 - GLGB_SHEFN

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Shewanella frigidimarina (strain NCIMB 400)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei415 – 4151NucleophileUniRule annotation
Active sitei468 – 4681Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciSFRI318167:GIXS-2240-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:Sfri_2165
OrganismiShewanella frigidimarina (strain NCIMB 400)
Taxonomic identifieri318167 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000000684: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7447441,4-alpha-glucan branching enzyme GlgBPRO_0000260698Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi318167.Sfri_2165.

Structurei

3D structure databases

ProteinModelPortaliQ081Q4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiAKLLFMG.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q081Q4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTVATPYFQQ GSEIALLNGE YTDVFSLLGM HSVNDGKALV VRCLIPGAIS
60 70 80 90 100
VDVLSAKDGR KVATLEQVNE HGLFAGKMGR RVKSFAYLLR VQYPLCEQLI
110 120 130 140 150
NDPYQFDSLL NPDDVYLFGE GSQLQTYHFQ GANWREHHGV KGVHFCVWAP
160 170 180 190 200
NAKQVAVMGD FNLWDNKRHI LRHHPASGLW DIFIAEVEPE QHYKYAISDM
210 220 230 240 250
HGNQVIKSDP YAVAMQPSPH NASKIPHVER YDWQDSQWLA DRASHQPHVQ
260 270 280 290 300
PMSIYEVQLA SWRRKGDDSQ EYTDYSQLIA ELVPYIKEMG FTHLQLMPIS
310 320 330 340 350
EYPFDGSWGY QPVGLFAPTY RFGDANGLRA FIDECHQQGI AVLLDWVPAH
360 370 380 390 400
FPRDPHGLVR FDGSCLYEHD DPRKGEQPDW DTLIYNYGRA EVRSFLYSNA
410 420 430 440 450
HYWLDEFHFD GLRLDAVSSM LYLDYSRRAD QWIPNKFGGR ENLEAISFLQ
460 470 480 490 500
ELNARMYQCF PGINMIAEES TAWPGVTQAT SNNGLGFGFK WNMGWMNDTL
510 520 530 540 550
RYISCDPLFR RYHHGELTFS LVYAFTEQFI LSLSHDEVVH GKGSLLHKIP
560 570 580 590 600
GDDWQKFATL RAYYGFMWTH PGKKLLFMGN EFAQRNEWNH NQSLDWHLLT
610 620 630 640 650
YAPHQGVQDW VRDLNQCYQQ YPALYQRDHH SDGFQWLDCN NADNNILVFC
660 670 680 690 700
RFGMDKQQHV VIVVNMSPQV YYDFRVGVPT AQNYRELLNS DHRHYGGGDV
710 720 730 740
VNDNPCEAQV TPWQGMSHSI VITVPPLGCS IWVPELDEQD QPTQ
Length:744
Mass (Da):85,845
Last modified:October 31, 2006 - v1
Checksum:iC6F3490C64FA7E99
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000447 Genomic DNA. Translation: ABI72011.1.
RefSeqiYP_750849.1. NC_008345.1.

Genome annotation databases

EnsemblBacteriaiABI72011; ABI72011; Sfri_2165.
GeneIDi4279077.
KEGGisfr:Sfri_2165.
PATRICi23498343. VBISheFri14343_2249.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000447 Genomic DNA. Translation: ABI72011.1 .
RefSeqi YP_750849.1. NC_008345.1.

3D structure databases

ProteinModelPortali Q081Q4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 318167.Sfri_2165.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABI72011 ; ABI72011 ; Sfri_2165 .
GeneIDi 4279077.
KEGGi sfr:Sfri_2165.
PATRICi 23498343. VBISheFri14343_2249.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi AKLLFMG.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci SFRI318167:GIXS-2240-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NCIMB 400.

Entry informationi

Entry nameiGLGB_SHEFN
AccessioniPrimary (citable) accession number: Q081Q4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: October 31, 2006
Last modified: October 29, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3