Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Sfri_2643

Organism
Shewanella frigidimarina (strain NCIMB 400)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSFRI318167:GIXS-2731-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Sfri_2643Imported
OrganismiShewanella frigidimarina (strain NCIMB 400)Imported
Taxonomic identifieri318167 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000000684: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi318167.Sfri_2643.

Structurei

3D structure databases

ProteinModelPortaliQ07ZT1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

Q07ZT1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTSKITRQAN ASEDSLLRIF TAPEDSTSTL SIIEQKLSQD LAGFLGNSIA
60 70 80 90 100
ALEKPLSEIE TDFSAYQIPT EPKFVSDYAD EIMQNLVAHS VHTSAPSFIG
110 120 130 140 150
HMTSALPYFV LPLSKMMVGL NQNLVKIETS KAFTPLERQV LGMMHNLVYQ
160 170 180 190 200
QSDDFYHQWM HSANHSLGAF CSGGTVANIT ALWIARNRLL QPRGDFKGVT
210 220 230 240 250
REGMTKALRF YGYDDLAILV SDRGHYSLGK TADLLGIGRD NIISIPTDEH
260 270 280 290 300
HKVDVAAMRD AAEKLAQQNI KVMAIVGIAG TTETGNVDPL TELAALASEL
310 320 330 340 350
NCHFHVDAAW GGASLLSKKY SHLLKGIELA DSVTIDAHKQ MYVPMGAGMV
360 370 380 390 400
LFKDPELAKA IVHHAEYILR VGSKDLGSQT LEGSRPGMAM LVHACLQIIG
410 420 430 440 450
RDGYEILINN SLEKARYFGS IIDQHADFEL VTAPELCLLT YRYVPKSVQA
460 470 480 490 500
ILTTALANQD SALVASINEL LDGLTQFIQK HQREQGKSFV SRTRIKPAKY
510 520 530 540
LRQPTTVFRV VLANPLTSHQ ILHDVLTEQV EIAALDSEYL PQLLAL
Length:546
Mass (Da):60,098
Last modified:October 31, 2006 - v1
Checksum:i0C13A2BE828051C1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000447 Genomic DNA. Translation: ABI72484.1.
RefSeqiYP_751322.1. NC_008345.1.

Genome annotation databases

EnsemblBacteriaiABI72484; ABI72484; Sfri_2643.
GeneIDi4279550.
KEGGisfr:Sfri_2643.
PATRICi23499357. VBISheFri14343_2745.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000447 Genomic DNA. Translation: ABI72484.1.
RefSeqiYP_751322.1. NC_008345.1.

3D structure databases

ProteinModelPortaliQ07ZT1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi318167.Sfri_2643.

Protocols and materials databases

DNASUi4279550.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABI72484; ABI72484; Sfri_2643.
GeneIDi4279550.
KEGGisfr:Sfri_2643.
PATRICi23499357. VBISheFri14343_2745.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciSFRI318167:GIXS-2731-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NCIMB 400Imported.

Entry informationi

Entry nameiQ07ZT1_SHEFN
AccessioniPrimary (citable) accession number: Q07ZT1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: February 4, 2015
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.