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Q07YM3 (Q07YM3_SHEFN) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
ATP synthase subunit a 1 HAMAP MF_01393
Alternative name(s):
ATP synthase F0 sector subunit a 1 HAMAP MF_01393
F-ATPase subunit 6 1 HAMAP MF_01393
Gene names
Name:atpB1 HAMAP MF_01393
Ordered Locus Names:Sfri_3053
OrganismShewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI72891.1
Taxonomic identifier318167 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length246 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane By similarity. HAMAP MF_01393

Subunit structure

F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a1, b2 and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF1 is attached to CF0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains By similarity. HAMAP MF_01393

Subcellular location

Cell inner membrane; Multi-pass membrane protein By similarity HAMAP MF_01393.

Sequence similarities

Belongs to the ATPase A chain family. HAMAP MF_01393

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Transmembrane20 – 4021Helical; By similarity HAMAP MF_01393
Transmembrane78 – 9821Helical; By similarity HAMAP MF_01393
Transmembrane107 – 12721Helical; By similarity HAMAP MF_01393
Transmembrane173 – 19321Helical; By similarity HAMAP MF_01393
Transmembrane194 – 21421Helical; By similarity HAMAP MF_01393

Sequences

Sequence LengthMass (Da)Tools
Q07YM3 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 991FDB19BE103D73

FASTA24627,107
        10         20         30         40         50         60 
MNLSPDQIIF WQMSFVKLNA TIVFTWIVMM LLVIGSILIT RKLSKDMQRS RWQNLLEVVV 

        70         80         90        100        110        120 
ITISKQIEEV GLSNPHKYLG FLGSLFLFIA TSAICTVIPG FEPPTGSLSS TVALALCVFV 

       130        140        150        160        170        180 
AVPMFGIEKQ GLRGYLASYT KPTVIMLPFN LISEVSRTLA LAVRLFGNMM SGVMILGILL 

       190        200        210        220        230        240 
SITPFLFPIV MTLLGLLTGM VQAYIFFILA TVYIAAATRI QQPERELAQD GSASTEKQDT 


KTGSQQ

« Hide

References

[1]"Complete sequence of Shewanella frigidimarina NCIMB 400."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. expand/collapse author list , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCIMB 400.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000447 Genomic DNA. Translation: ABI72891.1.
RefSeqYP_751730.1. NC_008345.1.

3D structure databases

ProteinModelPortalQ07YM3.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ07YM3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4279957.
GenomeReviewsGene locus Sfri_3053 in contig CP000447_GR.
KEGGsfr:Sfri_3053.
NMPDRfig|318167.10.peg.2932.
PATRIC23500247. VBISheFri14343_3164.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0356.
HOGENOMHBG734175.
OMAVQAYIFS.
ProtClustDBPRK05815.

Family and domain databases

HAMAPMF_01393. ATP_synth_a_bact.
[Tree]
InterProIPR017692. Alt_ATPase_F0-cplx_Asu.
IPR000568. ATPase_F0-cplx_asu.
IPR023011. ATPase_F0-cplx_asu_AS.
[Graphical view]
Gene3DG3DSA:1.20.120.220. ATPase_F0_A. 1 hit.
KOK02108.
PANTHERPTHR11410. ATPase_F0_A. 1 hit.
PfamPF00119. ATP-synt_A. 1 hit.
[Graphical view]
PRINTSPR00123. ATPASEA.
SUPFAMSSF81336. ATPase_F0_A. 1 hit.
TIGRFAMsTIGR03306. AltF1_A. 1 hit.
TIGR01131. ATP_synt_6_or_A. 1 hit.
PROSITEPS00449. ATPASE_A. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ07YM3_SHEFN
AccessionPrimary (citable) accession number: Q07YM3
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: January 25, 2012
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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