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Q07YH3 (Q07YH3_SHEFN) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Heparinase II/III family protein EMBL ABI72941.1
Gene names
Ordered Locus Names:Sfri_3104
OrganismShewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI72941.1
Taxonomic identifier318167 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length760 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABI72941.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processalginic acid catabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentperiplasmic space

Inferred from electronic annotation. Source: InterPro

   Molecular functionpoly(beta-D-mannuronate) lyase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 4040 Potential EMBL ABI72941.1
Chain41 – 760720 Potential EMBL ABI72941.1
PRO_5000130991

Sequences

Sequence LengthMass (Da)Tools
Q07YH3 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 7BD918EC7BA5A9D8

FASTA76084,788
        10         20         30         40         50         60 
MKNFNLAAGV SPMTRIIKQA GKIALLASIT CAISLPVMAA QHPNLVINQQ DVAAMKQAIT 

        70         80         90        100        110        120 
QPGSFQNAFN TTQSNVDKGL DQPIEVPVPK DAGGGYTHEK HKSNYQQMYD TGIIYQLTGD 

       130        140        150        160        170        180 
KKYAEYVKDM LLQYATLYPT LPLHPMRKSN NEGKLFWQGL NEAVWLVHTI QAYDFIYDAL 

       190        200        210        220        230        240 
TPAERNTIET GAIIPAALFL SEQSPHTFNK VHNHGTWATA AVGMSGYVLD KPLWVERALY 

       250        260        270        280        290        300 
DLNLAKKGGF MRQLDELFSP DGYYNEGPYY QRYALMPFVT FAKAIEQNEP QRKIFQYRDG 

       310        320        330        340        350        360 
ILLKAITSTV ELSYNKLFFP LNDAIKSKGI DTIELVNGVA IAYGLNGDPR LLDIAQQQHN 

       370        380        390        400        410        420 
ILLTGDGLKV AQGLDNKLQQ PFPFVSTLFR DGQQGDDGAL VVMRQGKATD QAIVFKATAQ 

       430        440        450        460        470        480 
GLGHGHFDKL TWQFYDAGNE IVSDYGAARF LNVEAKFGGR YLPENESWAK QTIAHNTLIV 

       490        500        510        520        530        540 
DEKSHFNGKL KAANKNNPTL HFYSAKQDLT IASASIDTAY DDVAFKRTLA LVNIKQRDAV 

       550        560        570        580        590        600 
IGIDIMRVTA NKPHQYDLPV HYQGQLIDTN FDRQASLTQL SALGTENGYQ HLWLLATANL 

       610        620        630        640        650        660 
AKDKAANKLA KVTWLNDNGH FYTHSTLVNT NFNNATNEQM LFTQLGANDP DMNLRQQQSF 

       670        680        690        700        710        720 
IHRVNATNHT YVSVMEPHGE YNPSKEYTLE ATSNIAGLIH HQQAELEAVQ IRFTDGQQYL 

       730        740        750        760 
LAINHADNAV TQETQSVISV NGVQYPFSGR AELLDIKESK

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References

[1]"Complete sequence of Shewanella frigidimarina NCIMB 400."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. expand/collapse author list , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCIMB 400.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000447 Genomic DNA. Translation: ABI72941.1.
RefSeqYP_751780.1. NC_008345.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ07YH3.

Protein family/group databases

CAZyPL17. Polysaccharide Lyase Family 17.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4280007.
GenomeReviewsGene locus Sfri_3104 in contig CP000447_GR.
KEGGsfr:Sfri_3104.
NMPDRfig|318167.10.peg.2979.
PATRIC23500353. VBISheFri14343_3217.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG45022.
HOGENOMHBG742331.
OMANGYQHLW.
ProtClustDBCLSK769500.

Family and domain databases

InterProIPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
IPR012480. Hepar_II_III.
[Graphical view]
Gene3DG3DSA:1.50.10.110. Alginate_lyase. 1 hit.
PfamPF05426. Alginate_lyase. 1 hit.
PF07940. Hepar_II_III. 1 hit.
[Graphical view]
SUPFAMSSF48230. Chondroitin_lyas. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ07YH3_SHEFN
AccessionPrimary (citable) accession number: Q07YH3
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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