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Q07YE0 (Q07YE0_SHEFN) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Malate synthase G HAMAP-Rule MF_00641 RuleBase RU003572
EC=2.3.3.9 HAMAP-Rule MF_00641 RuleBase RU003572
Gene names
Name:glcB HAMAP-Rule MF_00641
Ordered Locus Names:Sfri_3137
OrganismShewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI72974.1
Taxonomic identifier318167 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella ›

Protein attributes

Sequence length731 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Acetyl-CoA + H2O + glyoxylate = (S)-malate + CoA. HAMAP-Rule MF_00641 RuleBase RU003572 SAAS SAAS023310

Pathway

Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. HAMAP-Rule MF_00641 RuleBase RU003572 SAAS SAAS023310

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00641 SAAS SAAS001465

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00641 RuleBase RU003572.

Sequence similarities

Belongs to the malate synthase family. GlcB subfamily. HAMAP-Rule MF_00641 RuleBase RU003572

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3441Proton acceptor By similarity HAMAP-Rule MF_00641
Active site6371Proton donor By similarity HAMAP-Rule MF_00641

Sequences

Sequence LengthMass (Da)Tools
Q07YE0 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: FB67B8D023F7ACA6

FASTA73179,783
        10         20         30         40         50         60 
MTARIQVGGL HIAQALWQLV DSDICPGTGI DSATFWAKFE DIISEFSPVN VKLLEKRQQL 

        70         80         90        100        110        120 
QQQIDQWHID HPTKDFDPAT YKAFLFEIGY LVPEGEAFQI STENVDHEIA AQAGPQLVVP 

       130        140        150        160        170        180 
VKNARFALNA ANARWGSLYD ALYGTDAISE DGGAELTKQY NPVRGNKVIA FAKQHLDTAA 

       190        200        210        220        230        240 
PLAQGSHADV TRYYLDAGVL RVQLTDGSTT TLAQTDKCVG YQGSADAPSA ILLVNNGLHI 

       250        260        270        280        290        300 
EIQIDPSSVI GGSDRAGVKD LLVEAAVTTI MDCEDSVAAV DAEDKVEVYR NWLGLMQGNL 

       310        320        330        340        350        360 
SASLTKNGKE IVRDLNDDRV YTAANANQSA KTVTLPGRSL LFVRNVGHLM TIDAVLDKNG 

       370        380        390        400        410        420 
NEIPEGILDG MITVLAAMHD LKGNNNGRSN SRKGSVNIVK PKMHGPEEVQ FTCDLFTKIE 

       430        440        450        460        470        480 
DALKLPRNTI KVGIMDEERR TTLNLKECIR AAKERVVFIN TGFLDRTGDE LHTSMLAGPF 

       490        500        510        520        530        540 
VPKSVMKQQK WISAYEDWNV DIGLECGLQG RAQIGKGMWP MPDEMAAMLE QKSAHPKAGA 

       550        560        570        580        590        600 
NTAWVPSPNG AVLHSTHYHQ INVADVQQKI KQRPRASIDS LLTIPLLAEG VTLTNEQITF 

       610        620        630        640        650        660 
ELENNAQGIL GYVVRWIDQG VGCSKVPDIN NVGLMEDRAT LRISSQYLAN WLEHGICSEA 

       670        680        690        700        710        720 
QVMAALKKMA AVVDTQNAGD PLYTNMAPNF DGIAFKAACD LIFKGKSQPS GYTEPLLHAY 

       730 
RIQVKAKAKA G

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References

[1]"Complete sequence of Shewanella frigidimarina NCIMB 400."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. expand/collapse author list , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCIMB 400.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000447 Genomic DNA. Translation: ABI72974.1.
RefSeqYP_751813.1. NC_008345.1.

3D structure databases

ProteinModelPortalQ07YE0.
SMRQ07YE0. Positions 2-728.
ModBaseSearch...

Protein-protein interaction databases

STRING318167.Sfri_3137.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABI72974; ABI72974; Sfri_3137.
GeneID4280040.
KEGGsfr:Sfri_3137.
PATRIC23500421. VBISheFri14343_3251.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2225.
HOGENOMHOG000220740.
KOK01638.
OMAVVKPKMH.
ProtClustDBPRK02999.

Enzyme and pathway databases

BioCycSFRI318167:GIXS-3251-MONOMER.
UniPathwayUPA00703; UER00720.

Family and domain databases

Gene3D2.170.170.11. 2 hits.
HAMAPMF_00641. Malate_synth_G.
InterProIPR011076. Malate_synth-like.
IPR023310. Malate_synth_G_beta_sub_dom.
IPR001465. Malate_synthase.
IPR006253. Malate_synthG.
[Graphical view]
PANTHERPTHR21631:SF1. PTHR21631:SF1. 1 hit.
PfamPF01274. Malate_synthase. 1 hit.
[Graphical view]
SUPFAMSSF51645. Malat_synth_like. 1 hit.
TIGRFAMsTIGR01345. malate_syn_G. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ07YE0_SHEFN
AccessionPrimary (citable) accession number: Q07YE0
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: May 1, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info