Q07Y43 (Q07Y43_SHEFN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
UDP-N-acetylmuramate EMBL ABI73071.1

Gene names

Ordered Locus Names:

Sfri_3235

Organism

Shewanella frigidimarina (strain NCIMB 400) [Complete proteome] [HAMAP] EMBL ABI73071.1

Taxonomic identifier

318167 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella frigidimarina

Protein attributes

Sequence length	479 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the MurCDEF family. RuleBase RU003630

Ontologies

Keywords
Domain	Signal EMBL ABI73071.1
Ligand	ATP-binding RuleBase RU003630 Nucleotide-binding
Molecular function	Ligase RuleBase RU003630
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cell wall organization Inferred from electronic annotation. Source: InterPro peptidoglycan biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW acid-amino acid ligase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 23	23	Potential EMBL ABI73071.1
	Chain	24 – 479	456	Potential EMBL ABI73071.1		PRO_5000131020

Sequences

	Sequence		Length	Mass (Da)
	Q07Y43 [UniParc]. Last modified October 31, 2006. Version 1. Checksum: D81E4874831B9FA5	FASTA	479	51,777
	10 20 30 40 50 60 MHVHILGICG TFMGGLALLA RAMGHKVTGS DANVYPPMST QLEQQGIELI QGFDPAQLGK 70 80 90 100 110 120 EGDNQPDLVV IGNAMSRGNP CVEAVLNRGI KYTSGPQFLS EHILQDRWVL AVAGTHGKTS 130 140 150 160 170 180 TSSMLAWVLE YCGYEPGFLI GGVPQNFGVS ARLGNSVFFV VEADEYDSAF FDKRSKFVHY 190 200 210 220 230 240 HPRTLVINNL EFDHADIFAD LAAIQRQFNH VIRTVPGEGK VIWPSDVEAV QQVIDMGCWS 250 260 270 280 290 300 EQEIYSKATS LTTGLAEHSV NVSANQGEPN AWQPRTIADD GHEFEVLFKG ESQGIVNWSL 310 320 330 340 350 360 IGQHNIENAI MAIAAARHVG VAPSHAIEAL AQFSPPKRRL ELLATVNGVS VYDDFAHHPT 370 380 390 400 410 420 AIATTLQGLR AKVASSDNAN GNIIVVLEPR SNTMKSGVHK DTLANSMVLA DVGYLYQADN 430 440 450 460 470 IDWDIKASMA NAPIPVTVFN NIEDIINAVA ATANQGDTVV IMSNGGFNGI HQKMIKALA

References

[1]

"Complete sequence of Shewanella frigidimarina NCIMB 400." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Fredrickson J.K., Kolker E., McCuel L.A., DiChristina T., Nealson K.H., Newman D., Tiedje J.M. , Zhou J., Romine M.F., Culley D.E., Serres M., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NCIMB 400.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000447 Genomic DNA. Translation: ABI73071.1.
RefSeq	YP_751910.1. NC_008345.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	318167.Sfri_3235.
Protocols and materials databases
DNASU	4280137.
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABI73071; ABI73071; Sfri_3235.
GeneID	4280137.
KEGG	sfr:Sfri_3235.
PATRIC	23500625. VBISheFri14343_3353.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0773.
HOGENOM	HOG000256032.
KO	K02558.
OMA	PYTSGPQ.
ProtClustDB	CLSK907349.
Enzyme and pathway databases
BioCyc	SFRI318167:GIXS-3349-MONOMER.
Family and domain databases
Gene3D	3.40.1190.10. 1 hit. 3.40.50.720. 1 hit. 3.90.190.20. 1 hit.
InterPro	IPR004101. Mur_ligase_C. IPR013221. Mur_ligase_cen. IPR000713. Mur_ligase_N. IPR005757. Murein_peptide_ligase. IPR016040. NAD(P)-bd_dom. [Graphical view]
PANTHER	PTHR23135:SF8. PTHR23135:SF8. 1 hit.
Pfam	PF01225. Mur_ligase. 1 hit. PF02875. Mur_ligase_C. 1 hit. PF08245. Mur_ligase_M. 1 hit. [Graphical view]
SUPFAM	SSF53244. Mur_ligase_C. 1 hit. SSF53623. Mur_ligase_cen. 1 hit.
TIGRFAMs	TIGR01081. mpl. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q07Y43_SHEFN

Accession

Primary (citable) accession number: Q07Y43

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2006
Last sequence update:	October 31, 2006
Last modified:	May 1, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)