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Protein
Submitted name:

ATP dependent DNA ligase

Gene

RPE_0725

Organism
Rhodopseudomonas palustris (strain BisA53)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL316055:GHR9-734-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RPE_0725Imported
OrganismiRhodopseudomonas palustris (strain BisA53)Imported
Taxonomic identifieri316055 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000000654 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316055.RPE_0725.

Structurei

3D structure databases

ProteinModelPortaliQ07TQ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q07TQ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFAELLDR LAYEPGRNAK LRLITNYFRA TEDPDRGFAL AALTGALSFR
60 70 80 90 100
HAKPGLIRDL IASRADPVLF ALSYDYVGDL SETVALMWPK AIFSPPSCGE
110 120 130 140 150
GTGVGVPAIS SASGHPHPSP PHKGEGAGRA WGDHNNPPPP TLTEVVTTLA
160 170 180 190 200
TLGKAELPAQ LMRWLDELDE TGRWALLKLV TGSLRIGISA RLAKTAAAAL
210 220 230 240 250
GDKDPHEVEL IWPGLVPPYL DLFAWLEGRG PEPVNRDPAP FRPVMLAHAI
260 270 280 290 300
DDTDFAALDA ADYVAEWKWD GIRVQAVSGR DVHGTTVARL YSRSGEDITK
310 320 330 340 350
SFPDLLPSLR LPGAIDGELL IVRDGLVQSF NVLQQRLNRK SVTPKLMQEF
360 370 380 390 400
PIHLRAYDLL GDGDNDLRNL PFEQRRAKLE SFVAALDDPR IDLSATIAFA
410 420 430 440 450
DWDALSAARR DPASAGAGHD ADAVEGVMLK RRDALYLPGR PKGQWWKWKH
460 470 480 490 500
DPHLVDAVLM YAQRGHGKRS SYYSDYTFGL WTQSDAGEVL VPVGKAYFGF
510 520 530 540 550
TDEELLQIDR FVRRHTTEKF GPVRHVVHEP DQGLVLEVAF EGLQRSPRHK
560 570 580
SGVAMRFPRI NRLRWDKPPR DADRLATLER MLDKASS
Length:587
Mass (Da):65,096
Last modified:October 31, 2006 - v1
Checksum:iD35C3DDF8C980C9B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000463 Genomic DNA. Translation: ABJ04682.1.
RefSeqiWP_011662174.1. NC_008435.1.
YP_779662.1. NC_008435.1.

Genome annotation databases

EnsemblBacteriaiABJ04682; ABJ04682; RPE_0725.
KEGGirpe:RPE_0725.
PATRICi23255960. VBIRhoPal93214_0740.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000463 Genomic DNA. Translation: ABJ04682.1.
RefSeqiWP_011662174.1. NC_008435.1.
YP_779662.1. NC_008435.1.

3D structure databases

ProteinModelPortaliQ07TQ2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316055.RPE_0725.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABJ04682; ABJ04682; RPE_0725.
KEGGirpe:RPE_0725.
PATRICi23255960. VBIRhoPal93214_0740.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciRPAL316055:GHR9-734-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisA53Imported.

Entry informationi

Entry nameiQ07TQ2_RHOP5
AccessioniPrimary (citable) accession number: Q07TQ2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: May 27, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.