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Q07TP1

- Q07TP1_RHOP5

UniProt

Q07TP1 - Q07TP1_RHOP5

Protein

Lysine--tRNA ligase

Gene

lysS

Organism
Rhodopseudomonas palustris (strain BisA53)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (31 Oct 2006)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei303 – 3031ATPUniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. lysine-tRNA ligase activity Source: UniProtKB-HAMAP
    3. tRNA binding Source: InterPro

    GO - Biological processi

    1. lysyl-tRNA aminoacylation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetaseUniRule annotationImported, Ligase

    Keywords - Biological processi

    Protein biosynthesisUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciRPAL316055:GHR9-745-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Lysine--tRNA ligaseUniRule annotation (EC:6.1.1.6UniRule annotation)
    Alternative name(s):
    Lysyl-tRNA synthetaseUniRule annotation
    Gene namesi
    Name:lysSUniRule annotation
    Ordered Locus Names:RPE_0736Imported
    OrganismiRhodopseudomonas palustris (strain BisA53)Imported
    Taxonomic identifieri316055 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000000654: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi316055.RPE_0736.

    Family & Domainsi

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi51 – 599"HIGH" regionUniRule annotation
    Motifi300 – 3045"KMSKS" regionUniRule annotation

    Sequence similaritiesi

    Belongs to the class-I aminoacyl-tRNA synthetase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1384.
    HOGENOMiHOG000140447.
    KOiK04566.
    OMAiTMVRHAF.
    OrthoDBiEOG6WHNM6.

    Family and domain databases

    Gene3Di1.10.10.350. 1 hit.
    3.40.50.620. 2 hits.
    HAMAPiMF_00177. Lys_tRNA_synth_class1.
    InterProiIPR008925. aa-tRNA-synth_I_codon-bd.
    IPR020751. aa-tRNA-synth_I_codon-bd_sub2.
    IPR001412. aa-tRNA-synth_I_CS.
    IPR002904. Lys-tRNA-ligase.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view]
    PfamiPF01921. tRNA-synt_1f. 1 hit.
    [Graphical view]
    SUPFAMiSSF48163. SSF48163. 1 hit.
    TIGRFAMsiTIGR00467. lysS_arch. 1 hit.
    PROSITEiPS00178. AA_TRNA_LIGASE_I. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q07TP1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSTTDLAQNP AELRALAEQS NAWPFEQAKA LVARLNKAPK DEVLFETGYG    50
    PSGLPHIGTF GEVARTTMVR HAFRVLTEDK IKTRLIAFSD DMDGLRKVPD 100
    NVPNKELLSQ HLGKSLSSVP DPFGTHESFG AHNNARLRAF LDTFSFDYEF 150
    ASATDYYKSG RFDATLLKVL QRLDKVMAIM LPSLREERAA SYSPFLPICP 200
    RTGVVLQVPI AAHDVAAGTI SYDDPETNER VTLPVTGGHC KLQWKPDWAM 250
    RWTALGIDYE MAGKDLIDSV KLSGKICQAI GGTPPEGFNY ELFLDDKGQK 300
    ISKSKGNGLT IDEWLRYASP ESLSLFMYRE PKAAKRLYFD VIPRNVDDYQ 350
    QFLDGFSRQD AKQQLSNPVW HIHAGQPPKA DMPVTFQLLL TLVSSSNAEN 400
    AATLWGFIGR YRPGVSPQTH PKLDAMVGYA INYYRDFVAP TKSFREPTDQ 450
    ERAALQDLRD ALSHLPAEST AEAIQDVVYE IGRREPFLDH KKAAKDGKPG 500
    VSLDWFNMLY QVLLGQEKGP RFGSFVAVYG LANAVAMIDG ALARSA 546
    Length:546
    Mass (Da):60,716
    Last modified:October 31, 2006 - v1
    Checksum:i37639DB03E7C97B7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000463 Genomic DNA. Translation: ABJ04693.1.
    RefSeqiYP_779673.1. NC_008435.1.

    Genome annotation databases

    EnsemblBacteriaiABJ04693; ABJ04693; RPE_0736.
    GeneIDi4358348.
    KEGGirpe:RPE_0736.
    PATRICi23255982. VBIRhoPal93214_0751.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000463 Genomic DNA. Translation: ABJ04693.1 .
    RefSeqi YP_779673.1. NC_008435.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316055.RPE_0736.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABJ04693 ; ABJ04693 ; RPE_0736 .
    GeneIDi 4358348.
    KEGGi rpe:RPE_0736.
    PATRICi 23255982. VBIRhoPal93214_0751.

    Phylogenomic databases

    eggNOGi COG1384.
    HOGENOMi HOG000140447.
    KOi K04566.
    OMAi TMVRHAF.
    OrthoDBi EOG6WHNM6.

    Enzyme and pathway databases

    BioCyci RPAL316055:GHR9-745-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.350. 1 hit.
    3.40.50.620. 2 hits.
    HAMAPi MF_00177. Lys_tRNA_synth_class1.
    InterProi IPR008925. aa-tRNA-synth_I_codon-bd.
    IPR020751. aa-tRNA-synth_I_codon-bd_sub2.
    IPR001412. aa-tRNA-synth_I_CS.
    IPR002904. Lys-tRNA-ligase.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view ]
    Pfami PF01921. tRNA-synt_1f. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48163. SSF48163. 1 hit.
    TIGRFAMsi TIGR00467. lysS_arch. 1 hit.
    PROSITEi PS00178. AA_TRNA_LIGASE_I. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BisA53Imported.

    Entry informationi

    Entry nameiQ07TP1_RHOP5
    AccessioniPrimary (citable) accession number: Q07TP1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2006
    Last sequence update: October 31, 2006
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3