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Q07TP1 (Q07TP1_RHOP5) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Lysine--tRNA ligase HAMAP-Rule MF_00177
EC=6.1.1.6 HAMAP-Rule MF_00177
Alternative name(s):
Lysyl-tRNA synthetase HAMAP-Rule MF_00177
Gene names
Name:lysS HAMAP-Rule MF_00177
Ordered Locus Names:RPE_0736 EMBL ABJ04693.1
OrganismRhodopseudomonas palustris (strain BisA53) [Complete proteome] [HAMAP] EMBL ABJ04693.1
Taxonomic identifier316055 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas ›

Protein attributes

Sequence length546 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). HAMAP-Rule MF_00177

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00177.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP-Rule MF_00177 RuleBase RU003489

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif51 – 599"HIGH" region By similarity HAMAP-Rule MF_00177
Motif300 – 3045"KMSKS" region By similarity HAMAP-Rule MF_00177

Sites

Binding site3031ATP By similarity HAMAP-Rule MF_00177

Sequences

Sequence LengthMass (Da)Tools
Q07TP1 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 37639DB03E7C97B7

FASTA54660,716
        10         20         30         40         50         60 
MSTTDLAQNP AELRALAEQS NAWPFEQAKA LVARLNKAPK DEVLFETGYG PSGLPHIGTF 

        70         80         90        100        110        120 
GEVARTTMVR HAFRVLTEDK IKTRLIAFSD DMDGLRKVPD NVPNKELLSQ HLGKSLSSVP 

       130        140        150        160        170        180 
DPFGTHESFG AHNNARLRAF LDTFSFDYEF ASATDYYKSG RFDATLLKVL QRLDKVMAIM 

       190        200        210        220        230        240 
LPSLREERAA SYSPFLPICP RTGVVLQVPI AAHDVAAGTI SYDDPETNER VTLPVTGGHC 

       250        260        270        280        290        300 
KLQWKPDWAM RWTALGIDYE MAGKDLIDSV KLSGKICQAI GGTPPEGFNY ELFLDDKGQK 

       310        320        330        340        350        360 
ISKSKGNGLT IDEWLRYASP ESLSLFMYRE PKAAKRLYFD VIPRNVDDYQ QFLDGFSRQD 

       370        380        390        400        410        420 
AKQQLSNPVW HIHAGQPPKA DMPVTFQLLL TLVSSSNAEN AATLWGFIGR YRPGVSPQTH 

       430        440        450        460        470        480 
PKLDAMVGYA INYYRDFVAP TKSFREPTDQ ERAALQDLRD ALSHLPAEST AEAIQDVVYE 

       490        500        510        520        530        540 
IGRREPFLDH KKAAKDGKPG VSLDWFNMLY QVLLGQEKGP RFGSFVAVYG LANAVAMIDG 


ALARSA

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References

[1]"Complete sequence of Rhodopseudomonas palustris BisA53."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Kim E., Harwood C.S., Oda Y., Richardson P.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisA53 EMBL ABJ04693.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000463 Genomic DNA. Translation: ABJ04693.1.
RefSeqYP_779673.1. NC_008435.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING316055.RPE_0736.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABJ04693; ABJ04693; RPE_0736.
GeneID4358348.
KEGGrpe:RPE_0736.
PATRIC23255982. VBIRhoPal93214_0751.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1384.
HOGENOMHOG000140447.
KOK04566.
OMATMVRHAF.
ProtClustDBPRK00750.

Enzyme and pathway databases

BioCycRPAL316055:GHR9-745-MONOMER.

Family and domain databases

Gene3D1.10.10.350. 1 hit.
3.40.50.620. 2 hits.
HAMAPMF_00177. Lys_tRNA_synth_class1.
InterProIPR008925. aa-tRNA-synth_I_codon-bd.
IPR020751. aa-tRNA-synth_I_codon-bd_sub2.
IPR001412. aa-tRNA-synth_I_CS.
IPR002904. Lys-tRNA-ligase.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamPF01921. tRNA-synt_1f. 1 hit.
[Graphical view]
SUPFAMSSF48163. tRNA-synt_bind. 1 hit.
TIGRFAMsTIGR00467. lysS_arch. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ07TP1_RHOP5
AccessionPrimary (citable) accession number: Q07TP1
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: May 29, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info