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Q07TP1

- Q07TP1_RHOP5

UniProt

Q07TP1 - Q07TP1_RHOP5

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Protein
Lysine--tRNA ligase
Gene
lysS, RPE_0736
Organism
Rhodopseudomonas palustris (strain BisA53)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei303 – 3031ATP By similarityUniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. lysine-tRNA ligase activity Source: UniProtKB-HAMAP
  3. tRNA binding Source: InterPro

GO - Biological processi

  1. lysyl-tRNA aminoacylation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetaseUniRule annotationImported, Ligase

Keywords - Biological processi

Protein biosynthesisUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciRPAL316055:GHR9-745-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Lysine--tRNA ligaseUniRule annotation (EC:6.1.1.6UniRule annotation)
Alternative name(s):
Lysyl-tRNA synthetase
Gene namesi
Name:lysSUniRule annotation
Ordered Locus Names:RPE_0736Imported
OrganismiRhodopseudomonas palustris (strain BisA53)Imported
Taxonomic identifieri316055 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000000654: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi316055.RPE_0736.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi51 – 599"HIGH" region By similarityUniRule annotation
Motifi300 – 3045"KMSKS" region By similarityUniRule annotation

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1384.
HOGENOMiHOG000140447.
KOiK04566.
OMAiTMVRHAF.
OrthoDBiEOG6WHNM6.

Family and domain databases

Gene3Di1.10.10.350. 1 hit.
3.40.50.620. 2 hits.
HAMAPiMF_00177. Lys_tRNA_synth_class1.
InterProiIPR008925. aa-tRNA-synth_I_codon-bd.
IPR020751. aa-tRNA-synth_I_codon-bd_sub2.
IPR001412. aa-tRNA-synth_I_CS.
IPR002904. Lys-tRNA-ligase.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF01921. tRNA-synt_1f. 1 hit.
[Graphical view]
SUPFAMiSSF48163. SSF48163. 1 hit.
TIGRFAMsiTIGR00467. lysS_arch. 1 hit.
PROSITEiPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q07TP1-1 [UniParc]FASTAAdd to Basket

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MSTTDLAQNP AELRALAEQS NAWPFEQAKA LVARLNKAPK DEVLFETGYG    50
PSGLPHIGTF GEVARTTMVR HAFRVLTEDK IKTRLIAFSD DMDGLRKVPD 100
NVPNKELLSQ HLGKSLSSVP DPFGTHESFG AHNNARLRAF LDTFSFDYEF 150
ASATDYYKSG RFDATLLKVL QRLDKVMAIM LPSLREERAA SYSPFLPICP 200
RTGVVLQVPI AAHDVAAGTI SYDDPETNER VTLPVTGGHC KLQWKPDWAM 250
RWTALGIDYE MAGKDLIDSV KLSGKICQAI GGTPPEGFNY ELFLDDKGQK 300
ISKSKGNGLT IDEWLRYASP ESLSLFMYRE PKAAKRLYFD VIPRNVDDYQ 350
QFLDGFSRQD AKQQLSNPVW HIHAGQPPKA DMPVTFQLLL TLVSSSNAEN 400
AATLWGFIGR YRPGVSPQTH PKLDAMVGYA INYYRDFVAP TKSFREPTDQ 450
ERAALQDLRD ALSHLPAEST AEAIQDVVYE IGRREPFLDH KKAAKDGKPG 500
VSLDWFNMLY QVLLGQEKGP RFGSFVAVYG LANAVAMIDG ALARSA 546
Length:546
Mass (Da):60,716
Last modified:October 31, 2006 - v1
Checksum:i37639DB03E7C97B7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ04693.1.
RefSeqiYP_779673.1. NC_008435.1.

Genome annotation databases

EnsemblBacteriaiABJ04693; ABJ04693; RPE_0736.
GeneIDi4358348.
KEGGirpe:RPE_0736.
PATRICi23255982. VBIRhoPal93214_0751.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ04693.1 .
RefSeqi YP_779673.1. NC_008435.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316055.RPE_0736.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABJ04693 ; ABJ04693 ; RPE_0736 .
GeneIDi 4358348.
KEGGi rpe:RPE_0736.
PATRICi 23255982. VBIRhoPal93214_0751.

Phylogenomic databases

eggNOGi COG1384.
HOGENOMi HOG000140447.
KOi K04566.
OMAi TMVRHAF.
OrthoDBi EOG6WHNM6.

Enzyme and pathway databases

BioCyci RPAL316055:GHR9-745-MONOMER.

Family and domain databases

Gene3Di 1.10.10.350. 1 hit.
3.40.50.620. 2 hits.
HAMAPi MF_00177. Lys_tRNA_synth_class1.
InterProi IPR008925. aa-tRNA-synth_I_codon-bd.
IPR020751. aa-tRNA-synth_I_codon-bd_sub2.
IPR001412. aa-tRNA-synth_I_CS.
IPR002904. Lys-tRNA-ligase.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view ]
Pfami PF01921. tRNA-synt_1f. 1 hit.
[Graphical view ]
SUPFAMi SSF48163. SSF48163. 1 hit.
TIGRFAMsi TIGR00467. lysS_arch. 1 hit.
PROSITEi PS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisA53Imported.

Entry informationi

Entry nameiQ07TP1_RHOP5
AccessioniPrimary (citable) accession number: Q07TP1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: June 11, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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