Q07MF1 (Q07MF1_RHOP5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV subunit B EMBL ABJ06883.1
EC=5.99.1.3 EMBL ABJ06883.1

Gene names

Ordered Locus Names:

RPE_2946

Organism

Rhodopseudomonas palustris (strain BisA53) [Complete proteome] [HAMAP]

Taxonomic identifier

316055 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas

Protein attributes

Sequence length	685 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding SAAS SAAS002288 RuleBase RU000380 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q07MF1 [UniParc]. Last modified October 31, 2006. Version 1. Checksum: 18AB2847B1F1D2D3	FASTA	685	74,539
	10 20 30 40 50 60 MAKALKASPK SKTADDLFGA SPAKSAAPAK PSGRRASEAG DYTAADIEVL EGLEPVRRRP 70 80 90 100 110 120 GMYIGGTDEK ALHHLFAEVI DNSMDEALAG HADFIEVELS ADGFLTVTDN GRGIPVDPHP 130 140 150 160 170 180 KFPKKSALEV IMCTLHSGGK FDSKVYETSG GLHGVGVSVV NALSSLLEVE VARGQQLYKM 190 200 210 220 230 240 TFERGHPKGK LEDLGKVHNR RGTRIRFKPD TEIFGAKAAF KPQRLFKMAR SKAYLFGGVV 250 260 270 280 290 300 IRWKCDPELL KGLEDVPSED SFHFPGGLKD FLGAAIHNDT LVHPDIFSGK SGRNGAHGAC 310 320 330 340 350 360 EWAVAWTADA DGFLSSYCNT VPTPDGGTHE SGMRSALLRG LKDHAERVGQ GKRASSVTSE 370 380 390 400 410 420 DVMVGAAVML SVFVREPEFQ GQTKDRLATA EAQKIVEQAI KDPFDHWLSG NPAQANKLLE 430 440 450 460 470 480 FIIERADERL RRRAEKEISR KTAVKKLRLP GKLADCTNTA AEGSELFIVE GDSAGGSAKQ 490 500 510 520 530 540 GRDRKTQAIL PLRGKILNVA SAGKDKVVAN AQLSDLIQAL GCGTGANYRE DDLRYARIII 550 560 570 580 590 600 MTDADVDGAH IASLLITFFY RQMPKLIDDG HLYLAVPPLY RLTHGAKTVY ARDDAHKEEL 610 620 630 640 650 660 LKKEFNANAK VDVGRFKGLG EMMPAQLKET TMDPAKRTLL RVNLADIDRE GTADSVERLM 670 680 GTKAEARFAF ISDKAEFASD EMLDV

References

[1]

"Complete sequence of Rhodopseudomonas palustris BisA53." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Pelletier D.A., Kyrpides N., Kim E., Harwood C.S., Oda Y., Richardson P. Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BisA53.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000463 Genomic DNA. Translation: ABJ06883.1.
RefSeq	YP_781863.1. NC_008435.1.
3D structure databases
ProteinModelPortal	Q07MF1.
ModBase	Search...
Protein-protein interaction databases
STRING	Q07MF1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4360632.
GenomeReviews	Gene locus RPE_2946 in contig CP000463_GR.
KEGG	rpe:RPE_2946.
PATRIC	23260498. VBIRhoPal93214_2986.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0187.
HOGENOM	HBG304889.
OMA	QARDKEF.
ProtClustDB	PRK05559.
Enzyme and pathway databases
BioCyc	RPAL316055:RPE_2946-MONOMER.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q07MF1_RHOP5

Accession

Primary (citable) accession number: Q07MF1

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2006
Last sequence update:	October 31, 2006
Last modified:	January 25, 2012
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)