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Q07K87

- GLGB_RHOP5

UniProt

Q07K87 - GLGB_RHOP5

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene
glgB, RPE_3718
Organism
Rhodopseudomonas palustris (strain BisA53)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei399 – 3991Nucleophile By similarity
Active sitei452 – 4521Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciRPAL316055:GHR9-3757-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name:
BE
Gene namesi
Name:glgB
Ordered Locus Names:RPE_3718
OrganismiRhodopseudomonas palustris (strain BisA53)
Taxonomic identifieri316055 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000000654: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7157151,4-alpha-glucan branching enzyme GlgBUniRule annotationPRO_1000044995Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi316055.RPE_3718.

Structurei

3D structure databases

ProteinModelPortaliQ07K87.
SMRiQ07K87. Positions 112-714.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiLSYMQHD.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q07K87-1 [UniParc]FASTAAdd to Basket

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MIATLPDEAY AIVEGRHADP FRYLGPHREN ERTVVRAFLP EAASVEAVDE    50
KGGTAALERI HDAGLFAGLL PNGSARYQLR ARFGDTIVDL EDPYRFPPIL 100
TDFDLYLLGE GSHQRLYDKL GAHLMTLDGV EGVGFVVLAP NARRVSVVGD 150
FNFWDSRRHP MRVRGSGYWE LFIPRATAGD HYKFEIVSAQ GHLLPLKSDP 200
MAFAAEMRPS TASIVLDPER VPHPRPAPAG ISALTSPMSI YEVHLGSWRR 250
KDNNDWLSYR ELAEQLPAYV RDLGFTHVEF LPINEHPFDG SWGYQPTGLF 300
APTSRFGTPE DFAALVDACH AHGLGVLLDW VPGHFPDDPH GLAHFDGTSL 350
YEHANPLQGR HNDWGTLIYN YGRTEVVNFL VSNALFWLER YAVDGLRVDA 400
VASMLYLDYS RPAGGWIPNK YGGRENLEAI DFLRRFNTEV FAKFPNATTA 450
AEESTAWPQV SQPVEFGGLG FGYKWNMGWM HDTLNYISMD PIYRKYHHGQ 500
ILFGLHYAFS ENFILPLSHD EVVHGKRSIL GRMPGDHWQR FANLRAYYAF 550
MFAHPGKKLM FMGCEFGQDR EWNHDSSLDW HLLEQESHRG VQSVVRDLNN 600
LYRTMPALYE LDCDSFGFEW IVTDDGDRNV FAWIRKGNAA RARCLVIANF 650
SPNVYYDYQV RVPFPGKWRE VFNSDSAHYG GSNVGNIGEV EAVGLVPELS 700
LTIPPLAVIF LTPED 715
Length:715
Mass (Da):80,859
Last modified:October 31, 2006 - v1
Checksum:i9ADFEEC7426C8194
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ07647.1.
RefSeqiWP_011665114.1. NC_008435.1.
YP_782627.1. NC_008435.1.

Genome annotation databases

EnsemblBacteriaiABJ07647; ABJ07647; RPE_3718.
GeneIDi4361410.
KEGGirpe:RPE_3718.
PATRICi23262054. VBIRhoPal93214_3758.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ07647.1 .
RefSeqi WP_011665114.1. NC_008435.1.
YP_782627.1. NC_008435.1.

3D structure databases

ProteinModelPortali Q07K87.
SMRi Q07K87. Positions 112-714.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316055.RPE_3718.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABJ07647 ; ABJ07647 ; RPE_3718 .
GeneIDi 4361410.
KEGGi rpe:RPE_3718.
PATRICi 23262054. VBIRhoPal93214_3758.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi LSYMQHD.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci RPAL316055:GHR9-3757-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisA53.

Entry informationi

Entry nameiGLGB_RHOP5
AccessioniPrimary (citable) accession number: Q07K87
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 31, 2006
Last modified: September 3, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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