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Q07K87 (GLGB_RHOP5) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
1,4-alpha-glucan branching enzyme GlgB

EC=2.4.1.18
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name=BE
Gene names
Name:glgB
Ordered Locus Names:RPE_3718
OrganismRhodopseudomonas palustris (strain BisA53) [Complete proteome] [HAMAP]
Taxonomic identifier316055 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length715 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP-Rule MF_00685

Catalytic activity

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP-Rule MF_00685

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00685

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00685

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7157151,4-alpha-glucan branching enzyme GlgB HAMAP-Rule MF_00685
PRO_1000044995

Sites

Active site3991Nucleophile By similarity
Active site4521Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
Q07K87 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 9ADFEEC7426C8194

FASTA71580,859
        10         20         30         40         50         60 
MIATLPDEAY AIVEGRHADP FRYLGPHREN ERTVVRAFLP EAASVEAVDE KGGTAALERI 

        70         80         90        100        110        120 
HDAGLFAGLL PNGSARYQLR ARFGDTIVDL EDPYRFPPIL TDFDLYLLGE GSHQRLYDKL 

       130        140        150        160        170        180 
GAHLMTLDGV EGVGFVVLAP NARRVSVVGD FNFWDSRRHP MRVRGSGYWE LFIPRATAGD 

       190        200        210        220        230        240 
HYKFEIVSAQ GHLLPLKSDP MAFAAEMRPS TASIVLDPER VPHPRPAPAG ISALTSPMSI 

       250        260        270        280        290        300 
YEVHLGSWRR KDNNDWLSYR ELAEQLPAYV RDLGFTHVEF LPINEHPFDG SWGYQPTGLF 

       310        320        330        340        350        360 
APTSRFGTPE DFAALVDACH AHGLGVLLDW VPGHFPDDPH GLAHFDGTSL YEHANPLQGR 

       370        380        390        400        410        420 
HNDWGTLIYN YGRTEVVNFL VSNALFWLER YAVDGLRVDA VASMLYLDYS RPAGGWIPNK 

       430        440        450        460        470        480 
YGGRENLEAI DFLRRFNTEV FAKFPNATTA AEESTAWPQV SQPVEFGGLG FGYKWNMGWM 

       490        500        510        520        530        540 
HDTLNYISMD PIYRKYHHGQ ILFGLHYAFS ENFILPLSHD EVVHGKRSIL GRMPGDHWQR 

       550        560        570        580        590        600 
FANLRAYYAF MFAHPGKKLM FMGCEFGQDR EWNHDSSLDW HLLEQESHRG VQSVVRDLNN 

       610        620        630        640        650        660 
LYRTMPALYE LDCDSFGFEW IVTDDGDRNV FAWIRKGNAA RARCLVIANF SPNVYYDYQV 

       670        680        690        700        710 
RVPFPGKWRE VFNSDSAHYG GSNVGNIGEV EAVGLVPELS LTIPPLAVIF LTPED 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisA53."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Kim E., Harwood C.S., Oda Y., Richardson P.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisA53.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000463 Genomic DNA. Translation: ABJ07647.1.
RefSeqYP_782627.1. NC_008435.1.

3D structure databases

ProteinModelPortalQ07K87.
SMRQ07K87. Positions 112-714.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316055.RPE_3718.

Protein family/group databases

CAZyCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABJ07647; ABJ07647; RPE_3718.
GeneID4361410.
KEGGrpe:RPE_3718.
PATRIC23262054. VBIRhoPal93214_3758.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0296.
HOGENOMHOG000283037.
KOK00700.
OMALSYMQHD.
OrthoDBEOG6JX7GT.

Enzyme and pathway databases

BioCycRPAL316055:GHR9-3757-MONOMER.
UniPathwayUPA00164.

Family and domain databases

Gene3D2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPMF_00685. GlgB.
InterProIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFPIRSF000463. GlgB. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsTIGR01515. branching_enzym. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGB_RHOP5
AccessionPrimary (citable) accession number: Q07K87
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 31, 2006
Last modified: June 11, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries