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Protein
Submitted name:

Transcriptional regulator, NifA subfamily, Fis family

Gene

RPE_3885

Organism
Rhodopseudomonas palustris (strain BisA53)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi261 – 268ATPPROSITE-ProRule annotation8
Nucleotide bindingi324 – 333ATPPROSITE-ProRule annotation10

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandATP-bindingPROSITE-ProRule annotationSAAS annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, NifA subfamily, Fis familyImported
Gene namesi
Ordered Locus Names:RPE_3885Imported
OrganismiRhodopseudomonas palustris (strain BisA53)Imported
Taxonomic identifieri316055 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000000654 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316055.RPE_3885.

Structurei

3D structure databases

ProteinModelPortaliQ07JS3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini233 – 462Sigma-54 factor interactionInterPro annotationAdd BLAST230

Phylogenomic databases

eggNOGiENOG4108JUA. Bacteria.
COG3604. LUCA.
HOGENOMiHOG000058487.
KOiK02584.
OMAiIMGLRVR.
OrthoDBiPOG091H03UM.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.30.450.40. 1 hit.
InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR003018. GAF.
IPR029016. GAF_dom-like.
IPR009057. Homeobox-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
PfamiView protein in Pfam
PF01590. GAF. 1 hit.
PF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
PRINTSiPR01590. HTHFIS.
SMARTiView protein in SMART
SM00382. AAA. 1 hit.
SM00065. GAF. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiView protein in PROSITE
PS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.

Sequencei

Sequence statusi: Complete.

Q07JS3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHISIYPFDY NEADPLDALV IDLDVGMPIE EFSHCFTGEC RVNVLPILYK
60 70 80 90 100
LNQVISVSAD LAEPLRIILD IMQRNLKMVR GVITLYDRRS ETIFIHESFG
110 120 130 140 150
LSEEEKKRGV YALGEGITGK VVESGKVIIV PRLTESPEFL DRTGADHKRQ
160 170 180 190 200
NTAFFCVPIM LGQKVLGTIG AERVYMNRTL LKQDAEFLAA IALMIAPAVE
210 220 230 240 250
LFLMTNIDKV RLENENLRLK NALKERYKPS NIIGNSKSMQ DDVYELIGKV
260 270 280 290 300
AGTRATVLIL GESGVGKELV ANAIHYNSAH SEGPFIKFNC AAIPEHLAES
310 320 330 340 350
ELFGHEKGAF TGALATHKGS FEQADGGSIF LDEVGELIPS VQAKLLRVLQ
360 370 380 390 400
ERTIERVGSG KPIKVDVRII AATNRDLTER VASGDFREDL FYRLNVVPVT
410 420 430 440 450
VPPLRERGSD VILLADYFIS RSSKANGKTV KRISTPALNM LMSYHWPGNV
460 470 480 490 500
RELENVIERA VILSDDDVIH GYDLPPSLQT PKESGTKFGL SLEEKTRAVE
510 520 530 540 550
YEMIVEALKN SNGKIGEAAA ELGLTRRMLG VRMERYGISH KSFRTTALRS

ND
Length:552
Mass (Da):61,360
Last modified:October 31, 2006 - v1
Checksum:iA3CFC6744215E8BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000463 Genomic DNA. Translation: ABJ07811.1.

Genome annotation databases

EnsemblBacteriaiABJ07811; ABJ07811; RPE_3885.
KEGGirpe:RPE_3885.
PATRICi23262410. VBIRhoPal93214_3936.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000463 Genomic DNA. Translation: ABJ07811.1.

3D structure databases

ProteinModelPortaliQ07JS3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316055.RPE_3885.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABJ07811; ABJ07811; RPE_3885.
KEGGirpe:RPE_3885.
PATRICi23262410. VBIRhoPal93214_3936.

Phylogenomic databases

eggNOGiENOG4108JUA. Bacteria.
COG3604. LUCA.
HOGENOMiHOG000058487.
KOiK02584.
OMAiIMGLRVR.
OrthoDBiPOG091H03UM.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.30.450.40. 1 hit.
InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR003018. GAF.
IPR029016. GAF_dom-like.
IPR009057. Homeobox-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
PfamiView protein in Pfam
PF01590. GAF. 1 hit.
PF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
PRINTSiPR01590. HTHFIS.
SMARTiView protein in SMART
SM00382. AAA. 1 hit.
SM00065. GAF. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiView protein in PROSITE
PS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ07JS3_RHOP5
AccessioniPrimary (citable) accession number: Q07JS3
Entry historyiIntegrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: April 12, 2017
This is version 82 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.