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Q07JS3

- Q07JS3_RHOP5

UniProt

Q07JS3 - Q07JS3_RHOP5

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Protein
Submitted name: Transcriptional regulator, NifA subfamily, Fis family
Gene
RPE_3885
Organism
Rhodopseudomonas palustris (strain BisA53)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. nucleoside-triphosphatase activity Source: InterPro
  3. sequence-specific DNA binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotations

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotations, DNA-bindingUniRule annotationSAAS annotations, Nucleotide-binding

Enzyme and pathway databases

BioCyciRPAL316055:GHR9-3923-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, NifA subfamily, Fis familyImported
Gene namesi
Ordered Locus Names:RPE_3885Imported
OrganismiRhodopseudomonas palustris (strain BisA53)Imported
Taxonomic identifieri316055 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000000654: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316055.RPE_3885.

Structurei

3D structure databases

ProteinModelPortaliQ07JS3.

Family & Domainsi

Sequence similaritiesi

Contains sigma-54 factor interaction domain.SAAS annotations
Contains sigma-5factor interaction domain.SAAS annotations

Phylogenomic databases

eggNOGiCOG3604.
HOGENOMiHOG000058487.
KOiK02584.
OMAiEEFSHCF.
OrthoDBiEOG6WHNMG.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.30.450.40. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003018. GAF.
IPR029016. GAF_dom_like.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF01590. GAF. 1 hit.
PF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
SM00065. GAF. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q07JS3-1 [UniParc]FASTAAdd to Basket

« Hide

MHISIYPFDY NEADPLDALV IDLDVGMPIE EFSHCFTGEC RVNVLPILYK    50
LNQVISVSAD LAEPLRIILD IMQRNLKMVR GVITLYDRRS ETIFIHESFG 100
LSEEEKKRGV YALGEGITGK VVESGKVIIV PRLTESPEFL DRTGADHKRQ 150
NTAFFCVPIM LGQKVLGTIG AERVYMNRTL LKQDAEFLAA IALMIAPAVE 200
LFLMTNIDKV RLENENLRLK NALKERYKPS NIIGNSKSMQ DDVYELIGKV 250
AGTRATVLIL GESGVGKELV ANAIHYNSAH SEGPFIKFNC AAIPEHLAES 300
ELFGHEKGAF TGALATHKGS FEQADGGSIF LDEVGELIPS VQAKLLRVLQ 350
ERTIERVGSG KPIKVDVRII AATNRDLTER VASGDFREDL FYRLNVVPVT 400
VPPLRERGSD VILLADYFIS RSSKANGKTV KRISTPALNM LMSYHWPGNV 450
RELENVIERA VILSDDDVIH GYDLPPSLQT PKESGTKFGL SLEEKTRAVE 500
YEMIVEALKN SNGKIGEAAA ELGLTRRMLG VRMERYGISH KSFRTTALRS 550
ND 552
Length:552
Mass (Da):61,360
Last modified:October 31, 2006 - v1
Checksum:iA3CFC6744215E8BD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ07811.1.
RefSeqiWP_011665275.1. NC_008435.1.
YP_782791.1. NC_008435.1.

Genome annotation databases

EnsemblBacteriaiABJ07811; ABJ07811; RPE_3885.
GeneIDi4361576.
KEGGirpe:RPE_3885.
PATRICi23262410. VBIRhoPal93214_3936.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ07811.1 .
RefSeqi WP_011665275.1. NC_008435.1.
YP_782791.1. NC_008435.1.

3D structure databases

ProteinModelPortali Q07JS3.
ModBasei Search...

Protein-protein interaction databases

STRINGi 316055.RPE_3885.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABJ07811 ; ABJ07811 ; RPE_3885 .
GeneIDi 4361576.
KEGGi rpe:RPE_3885.
PATRICi 23262410. VBIRhoPal93214_3936.

Phylogenomic databases

eggNOGi COG3604.
HOGENOMi HOG000058487.
KOi K02584.
OMAi EEFSHCF.
OrthoDBi EOG6WHNMG.

Enzyme and pathway databases

BioCyci RPAL316055:GHR9-3923-MONOMER.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
3.30.450.40. 1 hit.
3.40.50.300. 1 hit.
InterProi IPR003593. AAA+_ATPase.
IPR003018. GAF.
IPR029016. GAF_dom_like.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view ]
Pfami PF01590. GAF. 1 hit.
PF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view ]
PRINTSi PR01590. HTHFIS.
SMARTi SM00382. AAA. 1 hit.
SM00065. GAF. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEi PS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisA53Imported.

Entry informationi

Entry nameiQ07JS3_RHOP5
AccessioniPrimary (citable) accession number: Q07JS3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: September 3, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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