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Q07JS3 (Q07JS3_RHOP5) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:RPE_3885 EMBL ABJ07811.1
OrganismRhodopseudomonas palustris (strain BisA53) [Complete proteome] [HAMAP] EMBL ABJ07811.1
Taxonomic identifier316055 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length552 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 sigma-54 factor interaction domain. RuleBase RU000717

Contains sigma-54 factor interaction domain. SAAS SAAS025662

Contains sigma-5factor interaction domain. SAAS SAAS025662

Sequences

Sequence LengthMass (Da)Tools
Q07JS3 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: A3CFC6744215E8BD

FASTA55261,360
        10         20         30         40         50         60 
MHISIYPFDY NEADPLDALV IDLDVGMPIE EFSHCFTGEC RVNVLPILYK LNQVISVSAD 

        70         80         90        100        110        120 
LAEPLRIILD IMQRNLKMVR GVITLYDRRS ETIFIHESFG LSEEEKKRGV YALGEGITGK 

       130        140        150        160        170        180 
VVESGKVIIV PRLTESPEFL DRTGADHKRQ NTAFFCVPIM LGQKVLGTIG AERVYMNRTL 

       190        200        210        220        230        240 
LKQDAEFLAA IALMIAPAVE LFLMTNIDKV RLENENLRLK NALKERYKPS NIIGNSKSMQ 

       250        260        270        280        290        300 
DDVYELIGKV AGTRATVLIL GESGVGKELV ANAIHYNSAH SEGPFIKFNC AAIPEHLAES 

       310        320        330        340        350        360 
ELFGHEKGAF TGALATHKGS FEQADGGSIF LDEVGELIPS VQAKLLRVLQ ERTIERVGSG 

       370        380        390        400        410        420 
KPIKVDVRII AATNRDLTER VASGDFREDL FYRLNVVPVT VPPLRERGSD VILLADYFIS 

       430        440        450        460        470        480 
RSSKANGKTV KRISTPALNM LMSYHWPGNV RELENVIERA VILSDDDVIH GYDLPPSLQT 

       490        500        510        520        530        540 
PKESGTKFGL SLEEKTRAVE YEMIVEALKN SNGKIGEAAA ELGLTRRMLG VRMERYGISH 

       550 
KSFRTTALRS ND 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisA53."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Kim E., Harwood C.S., Oda Y., Richardson P.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisA53 EMBL ABJ07811.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000463 Genomic DNA. Translation: ABJ07811.1.
RefSeqYP_782791.1. NC_008435.1.

3D structure databases

ProteinModelPortalQ07JS3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316055.RPE_3885.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABJ07811; ABJ07811; RPE_3885.
GeneID4361576.
KEGGrpe:RPE_3885.
PATRIC23262410. VBIRhoPal93214_3936.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3604.
HOGENOMHOG000058487.
KOK02584.
OMATIFIHES.
OrthoDBEOG6WHNMG.
ProtClustDBCLSK2487122.

Enzyme and pathway databases

BioCycRPAL316055:GHR9-3923-MONOMER.

Family and domain databases

Gene3D1.10.10.60. 1 hit.
3.40.50.300. 1 hit.
InterProIPR003593. AAA+_ATPase.
IPR003018. GAF.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamPF01590. GAF. 1 hit.
PF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSPR01590. HTHFIS.
SMARTSM00382. AAA. 1 hit.
SM00065. GAF. 1 hit.
[Graphical view]
SUPFAMSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ07JS3_RHOP5
AccessionPrimary (citable) accession number: Q07JS3
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: April 16, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)