Q07JS3 (Q07JS3_RHOP5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator, NifA subfamily, Fis family EMBL ABJ07811.1

Gene names

Ordered Locus Names:

RPE_3885 EMBL ABJ07811.1

Organism

Rhodopseudomonas palustris (strain BisA53) [Complete proteome] [HAMAP] EMBL ABJ07811.1

Taxonomic identifier

316055 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas › Rhodopseudomonas palustris

Protein attributes

Sequence length	552 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 sigma-54 factor interaction domain. SAAS SAAS025662 RuleBase RU000717

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS025662 RuleBase RU000717
Ligand	ATP-binding SAAS SAAS025662 RuleBase RU000717 DNA-binding SAAS SAAS025662 RuleBase RU004322 Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: UniProtKB-KW nucleoside-triphosphatase activity Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q07JS3 [UniParc]. Last modified October 31, 2006. Version 1. Checksum: A3CFC6744215E8BD	FASTA	552	61,360
	10 20 30 40 50 60 MHISIYPFDY NEADPLDALV IDLDVGMPIE EFSHCFTGEC RVNVLPILYK LNQVISVSAD 70 80 90 100 110 120 LAEPLRIILD IMQRNLKMVR GVITLYDRRS ETIFIHESFG LSEEEKKRGV YALGEGITGK 130 140 150 160 170 180 VVESGKVIIV PRLTESPEFL DRTGADHKRQ NTAFFCVPIM LGQKVLGTIG AERVYMNRTL 190 200 210 220 230 240 LKQDAEFLAA IALMIAPAVE LFLMTNIDKV RLENENLRLK NALKERYKPS NIIGNSKSMQ 250 260 270 280 290 300 DDVYELIGKV AGTRATVLIL GESGVGKELV ANAIHYNSAH SEGPFIKFNC AAIPEHLAES 310 320 330 340 350 360 ELFGHEKGAF TGALATHKGS FEQADGGSIF LDEVGELIPS VQAKLLRVLQ ERTIERVGSG 370 380 390 400 410 420 KPIKVDVRII AATNRDLTER VASGDFREDL FYRLNVVPVT VPPLRERGSD VILLADYFIS 430 440 450 460 470 480 RSSKANGKTV KRISTPALNM LMSYHWPGNV RELENVIERA VILSDDDVIH GYDLPPSLQT 490 500 510 520 530 540 PKESGTKFGL SLEEKTRAVE YEMIVEALKN SNGKIGEAAA ELGLTRRMLG VRMERYGISH 550 KSFRTTALRS ND

References

[1]

"Complete sequence of Rhodopseudomonas palustris BisA53." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Pelletier D.A., Kyrpides N., Kim E., Harwood C.S., Oda Y., Richardson P. Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BisA53 EMBL ABJ07811.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000463 Genomic DNA. Translation: ABJ07811.1.
RefSeq	YP_782791.1. NC_008435.1.
3D structure databases
ProteinModelPortal	Q07JS3.
ModBase	Search...
Protein-protein interaction databases
STRING	316055.RPE_3885.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABJ07811; ABJ07811; RPE_3885.
GeneID	4361576.
KEGG	rpe:RPE_3885.
PATRIC	23262410. VBIRhoPal93214_3936.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3604.
HOGENOM	HOG000058487.
KO	K02584.
OMA	TIFIHES.
ProtClustDB	CLSK2487122.
Enzyme and pathway databases
BioCyc	RPAL316055:GHR9-3939-MONOMER.
Family and domain databases
Gene3D	1.10.10.60. 1 hit.
InterPro	IPR003593. AAA+_ATPase. IPR003018. GAF. IPR009057. Homeodomain-like. IPR002197. HTH_Fis. IPR002078. Sigma_54_int. IPR025662. Sigma_54_int_dom_ATP-bd_1. IPR025943. Sigma_54_int_dom_ATP-bd_2. IPR025944. Sigma_54_int_dom_CS. [Graphical view]
Pfam	PF01590. GAF. 1 hit. PF02954. HTH_8. 1 hit. PF00158. Sigma54_activat. 1 hit. [Graphical view]
PRINTS	PR01590. HTHFIS.
SMART	SM00382. AAA. 1 hit. SM00065. GAF. 1 hit. [Graphical view]
SUPFAM	SSF46689. Homeodomain_like. 1 hit.
PROSITE	PS00675. SIGMA54_INTERACT_1. 1 hit. PS00676. SIGMA54_INTERACT_2. 1 hit. PS00688. SIGMA54_INTERACT_3. 1 hit. PS50045. SIGMA54_INTERACT_4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q07JS3_RHOP5

Accession

Primary (citable) accession number: Q07JS3

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2006
Last sequence update:	October 31, 2006
Last modified:	May 1, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)