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Q07JS3

- Q07JS3_RHOP5

UniProt

Q07JS3 - Q07JS3_RHOP5

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Protein
Submitted name:

Transcriptional regulator, NifA subfamily, Fis family

Gene

RPE_3885

Organism
Rhodopseudomonas palustris (strain BisA53)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. sequence-specific DNA binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, DNA-bindingUniRule annotationSAAS annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciRPAL316055:GHR9-3923-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, NifA subfamily, Fis familyImported
Gene namesi
Ordered Locus Names:RPE_3885Imported
OrganismiRhodopseudomonas palustris (strain BisA53)Imported
Taxonomic identifieri316055 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000000654: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316055.RPE_3885.

Structurei

3D structure databases

ProteinModelPortaliQ07JS3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 sigma-54 factor interaction domain.UniRule annotation
Contains sigma-54 factor interaction domain.SAAS annotation
Contains sigma-5factor interaction domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG3604.
HOGENOMiHOG000058487.
KOiK02584.
OMAiEEFSHCF.
OrthoDBiEOG6WHNMG.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.30.450.40. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003018. GAF.
IPR029016. GAF_dom_like.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF01590. GAF. 1 hit.
PF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
SM00065. GAF. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q07JS3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MHISIYPFDY NEADPLDALV IDLDVGMPIE EFSHCFTGEC RVNVLPILYK
60 70 80 90 100
LNQVISVSAD LAEPLRIILD IMQRNLKMVR GVITLYDRRS ETIFIHESFG
110 120 130 140 150
LSEEEKKRGV YALGEGITGK VVESGKVIIV PRLTESPEFL DRTGADHKRQ
160 170 180 190 200
NTAFFCVPIM LGQKVLGTIG AERVYMNRTL LKQDAEFLAA IALMIAPAVE
210 220 230 240 250
LFLMTNIDKV RLENENLRLK NALKERYKPS NIIGNSKSMQ DDVYELIGKV
260 270 280 290 300
AGTRATVLIL GESGVGKELV ANAIHYNSAH SEGPFIKFNC AAIPEHLAES
310 320 330 340 350
ELFGHEKGAF TGALATHKGS FEQADGGSIF LDEVGELIPS VQAKLLRVLQ
360 370 380 390 400
ERTIERVGSG KPIKVDVRII AATNRDLTER VASGDFREDL FYRLNVVPVT
410 420 430 440 450
VPPLRERGSD VILLADYFIS RSSKANGKTV KRISTPALNM LMSYHWPGNV
460 470 480 490 500
RELENVIERA VILSDDDVIH GYDLPPSLQT PKESGTKFGL SLEEKTRAVE
510 520 530 540 550
YEMIVEALKN SNGKIGEAAA ELGLTRRMLG VRMERYGISH KSFRTTALRS

ND
Length:552
Mass (Da):61,360
Last modified:October 31, 2006 - v1
Checksum:iA3CFC6744215E8BD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ07811.1.
RefSeqiYP_782791.1. NC_008435.1.

Genome annotation databases

EnsemblBacteriaiABJ07811; ABJ07811; RPE_3885.
GeneIDi4361576.
KEGGirpe:RPE_3885.
PATRICi23262410. VBIRhoPal93214_3936.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ07811.1 .
RefSeqi YP_782791.1. NC_008435.1.

3D structure databases

ProteinModelPortali Q07JS3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316055.RPE_3885.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABJ07811 ; ABJ07811 ; RPE_3885 .
GeneIDi 4361576.
KEGGi rpe:RPE_3885.
PATRICi 23262410. VBIRhoPal93214_3936.

Phylogenomic databases

eggNOGi COG3604.
HOGENOMi HOG000058487.
KOi K02584.
OMAi EEFSHCF.
OrthoDBi EOG6WHNMG.

Enzyme and pathway databases

BioCyci RPAL316055:GHR9-3923-MONOMER.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
3.30.450.40. 1 hit.
3.40.50.300. 1 hit.
InterProi IPR003593. AAA+_ATPase.
IPR003018. GAF.
IPR029016. GAF_dom_like.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view ]
Pfami PF01590. GAF. 1 hit.
PF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view ]
PRINTSi PR01590. HTHFIS.
SMARTi SM00382. AAA. 1 hit.
SM00065. GAF. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEi PS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisA53Imported.

Entry informationi

Entry nameiQ07JS3_RHOP5
AccessioniPrimary (citable) accession number: Q07JS3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: October 29, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3