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Q07JS3

- Q07JS3_RHOP5

UniProt

Q07JS3 - Q07JS3_RHOP5

Protein
Submitted name:

Transcriptional regulator, NifA subfamily, Fis family

Gene

RPE_3885

Organism
Rhodopseudomonas palustris (strain BisA53)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (31 Oct 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. nucleoside-triphosphatase activity Source: InterPro
    3. sequence-specific DNA binding Source: InterPro

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotationSAAS annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotationSAAS annotation, DNA-bindingUniRule annotationSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciRPAL316055:GHR9-3923-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Transcriptional regulator, NifA subfamily, Fis familyImported
    Gene namesi
    Ordered Locus Names:RPE_3885Imported
    OrganismiRhodopseudomonas palustris (strain BisA53)Imported
    Taxonomic identifieri316055 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000000654: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi316055.RPE_3885.

    Structurei

    3D structure databases

    ProteinModelPortaliQ07JS3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 sigma-54 factor interaction domain.UniRule annotation
    Contains sigma-54 factor interaction domain.SAAS annotation
    Contains sigma-5factor interaction domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG3604.
    HOGENOMiHOG000058487.
    KOiK02584.
    OMAiEEFSHCF.
    OrthoDBiEOG6WHNMG.

    Family and domain databases

    Gene3Di1.10.10.60. 1 hit.
    3.30.450.40. 1 hit.
    3.40.50.300. 1 hit.
    InterProiIPR003593. AAA+_ATPase.
    IPR003018. GAF.
    IPR029016. GAF_dom_like.
    IPR009057. Homeodomain-like.
    IPR002197. HTH_Fis.
    IPR027417. P-loop_NTPase.
    IPR002078. Sigma_54_int.
    IPR025662. Sigma_54_int_dom_ATP-bd_1.
    IPR025943. Sigma_54_int_dom_ATP-bd_2.
    IPR025944. Sigma_54_int_dom_CS.
    [Graphical view]
    PfamiPF01590. GAF. 1 hit.
    PF02954. HTH_8. 1 hit.
    PF00158. Sigma54_activat. 1 hit.
    [Graphical view]
    PRINTSiPR01590. HTHFIS.
    SMARTiSM00382. AAA. 1 hit.
    SM00065. GAF. 1 hit.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 1 hit.
    SSF52540. SSF52540. 1 hit.
    SSF55781. SSF55781. 1 hit.
    PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
    PS00676. SIGMA54_INTERACT_2. 1 hit.
    PS00688. SIGMA54_INTERACT_3. 1 hit.
    PS50045. SIGMA54_INTERACT_4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q07JS3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MHISIYPFDY NEADPLDALV IDLDVGMPIE EFSHCFTGEC RVNVLPILYK    50
    LNQVISVSAD LAEPLRIILD IMQRNLKMVR GVITLYDRRS ETIFIHESFG 100
    LSEEEKKRGV YALGEGITGK VVESGKVIIV PRLTESPEFL DRTGADHKRQ 150
    NTAFFCVPIM LGQKVLGTIG AERVYMNRTL LKQDAEFLAA IALMIAPAVE 200
    LFLMTNIDKV RLENENLRLK NALKERYKPS NIIGNSKSMQ DDVYELIGKV 250
    AGTRATVLIL GESGVGKELV ANAIHYNSAH SEGPFIKFNC AAIPEHLAES 300
    ELFGHEKGAF TGALATHKGS FEQADGGSIF LDEVGELIPS VQAKLLRVLQ 350
    ERTIERVGSG KPIKVDVRII AATNRDLTER VASGDFREDL FYRLNVVPVT 400
    VPPLRERGSD VILLADYFIS RSSKANGKTV KRISTPALNM LMSYHWPGNV 450
    RELENVIERA VILSDDDVIH GYDLPPSLQT PKESGTKFGL SLEEKTRAVE 500
    YEMIVEALKN SNGKIGEAAA ELGLTRRMLG VRMERYGISH KSFRTTALRS 550
    ND 552
    Length:552
    Mass (Da):61,360
    Last modified:October 31, 2006 - v1
    Checksum:iA3CFC6744215E8BD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000463 Genomic DNA. Translation: ABJ07811.1.
    RefSeqiWP_011665275.1. NC_008435.1.
    YP_782791.1. NC_008435.1.

    Genome annotation databases

    EnsemblBacteriaiABJ07811; ABJ07811; RPE_3885.
    GeneIDi4361576.
    KEGGirpe:RPE_3885.
    PATRICi23262410. VBIRhoPal93214_3936.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000463 Genomic DNA. Translation: ABJ07811.1 .
    RefSeqi WP_011665275.1. NC_008435.1.
    YP_782791.1. NC_008435.1.

    3D structure databases

    ProteinModelPortali Q07JS3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316055.RPE_3885.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABJ07811 ; ABJ07811 ; RPE_3885 .
    GeneIDi 4361576.
    KEGGi rpe:RPE_3885.
    PATRICi 23262410. VBIRhoPal93214_3936.

    Phylogenomic databases

    eggNOGi COG3604.
    HOGENOMi HOG000058487.
    KOi K02584.
    OMAi EEFSHCF.
    OrthoDBi EOG6WHNMG.

    Enzyme and pathway databases

    BioCyci RPAL316055:GHR9-3923-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.60. 1 hit.
    3.30.450.40. 1 hit.
    3.40.50.300. 1 hit.
    InterProi IPR003593. AAA+_ATPase.
    IPR003018. GAF.
    IPR029016. GAF_dom_like.
    IPR009057. Homeodomain-like.
    IPR002197. HTH_Fis.
    IPR027417. P-loop_NTPase.
    IPR002078. Sigma_54_int.
    IPR025662. Sigma_54_int_dom_ATP-bd_1.
    IPR025943. Sigma_54_int_dom_ATP-bd_2.
    IPR025944. Sigma_54_int_dom_CS.
    [Graphical view ]
    Pfami PF01590. GAF. 1 hit.
    PF02954. HTH_8. 1 hit.
    PF00158. Sigma54_activat. 1 hit.
    [Graphical view ]
    PRINTSi PR01590. HTHFIS.
    SMARTi SM00382. AAA. 1 hit.
    SM00065. GAF. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 1 hit.
    SSF52540. SSF52540. 1 hit.
    SSF55781. SSF55781. 1 hit.
    PROSITEi PS00675. SIGMA54_INTERACT_1. 1 hit.
    PS00676. SIGMA54_INTERACT_2. 1 hit.
    PS00688. SIGMA54_INTERACT_3. 1 hit.
    PS50045. SIGMA54_INTERACT_4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BisA53Imported.

    Entry informationi

    Entry nameiQ07JS3_RHOP5
    AccessioniPrimary (citable) accession number: Q07JS3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2006
    Last sequence update: October 31, 2006
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3