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Q07J10

- TYPH_RHOP5

UniProt

Q07J10 - TYPH_RHOP5

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Protein

Putative thymidine phosphorylase

Gene

RPE_4149

Organism
Rhodopseudomonas palustris (strain BisA53)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. phosphorylase activity Source: InterPro
  2. thymidine phosphorylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. pyrimidine nucleobase metabolic process Source: InterPro
  2. pyrimidine nucleoside metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciRPAL316055:GHR9-4189-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative thymidine phosphorylaseUniRule annotation (EC:2.4.2.4UniRule annotation)
Alternative name(s):
TdRPaseUniRule annotation
Gene namesi
Ordered Locus Names:RPE_4149
OrganismiRhodopseudomonas palustris (strain BisA53)
Taxonomic identifieri316055 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000000654: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 513513Putative thymidine phosphorylasePRO_0000314714Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi316055.RPE_4149.

Structurei

3D structure databases

ProteinModelPortaliQ07J10.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0213.
HOGENOMiHOG000252767.
KOiK00758.
OMAiCLIWGGH.
OrthoDBiEOG61ZTGG.

Family and domain databases

Gene3Di3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPiMF_00703. Thymid_phosp_2.
InterProiIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERiPTHR10515. PTHR10515. 1 hit.
PfamiPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFiPIRSF000478. TP_PyNP. 1 hit.
SMARTiSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMiSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsiTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEiPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q07J10-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSPVDAARPQ LKIRQIHLDT GRENVAVISR HSKALRPEVF SGFSRVEIRR
60 70 80 90 100
GNQSMLATLL ITDDNAMVGP DDLGLAEPAF RRFGEAAGSL VSVTPASPPA
110 120 130 140 150
SLDAVRGKIQ GRTLTAPEIE AIVNDLARYR YSDMEIAAFL IGAARFMTSD
160 170 180 190 200
ELLALVSAMA SVGTQLRWDR PVVVDKHCIG GIPGNRTSMV LVPIVAAHGL
210 220 230 240 250
TIPKTSSRAI TSPAGTADTM EVLARVDVGV PEMKEIVAAC NGCLIWGGHV
260 270 280 290 300
NLSPADDILI SVERPLCLDT REQMVASIMS KKLAAGSTHL LVDLPLGPSA
310 320 330 340 350
KVISPIDAMR LRKLFEFVGD HFGIAVETIT TDGRQPIGNG IGPVLEAQDV
360 370 380 390 400
MAVLGNDPKA PADLREKSLR LAGHLLEYDP NLRGGSGYAR ARELLESGAA
410 420 430 440 450
LKQMQKIIDN QGPTNCRKDL GTLTTDIVAP RDGVVTGIDN LQLNRLARTA
460 470 480 490 500
GAPIDKGAGI KLFKKVGDRV EQGEPLYRIY AFDPSEQELA VSAAEESSGY
510
TVDGVHAFRE QVL
Length:513
Mass (Da):54,877
Last modified:October 31, 2006 - v1
Checksum:i01A9C95320EF54B3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ08074.1.
RefSeqiWP_011665534.1. NC_008435.1.
YP_783054.1. NC_008435.1.

Genome annotation databases

EnsemblBacteriaiABJ08074; ABJ08074; RPE_4149.
GeneIDi4361842.
KEGGirpe:RPE_4149.
PATRICi23262942. VBIRhoPal93214_4200.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000463 Genomic DNA. Translation: ABJ08074.1 .
RefSeqi WP_011665534.1. NC_008435.1.
YP_783054.1. NC_008435.1.

3D structure databases

ProteinModelPortali Q07J10.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316055.RPE_4149.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABJ08074 ; ABJ08074 ; RPE_4149 .
GeneIDi 4361842.
KEGGi rpe:RPE_4149.
PATRICi 23262942. VBIRhoPal93214_4200.

Phylogenomic databases

eggNOGi COG0213.
HOGENOMi HOG000252767.
KOi K00758.
OMAi CLIWGGH.
OrthoDBi EOG61ZTGG.

Enzyme and pathway databases

BioCyci RPAL316055:GHR9-4189-MONOMER.

Family and domain databases

Gene3Di 3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPi MF_00703. Thymid_phosp_2.
InterProi IPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view ]
PANTHERi PTHR10515. PTHR10515. 1 hit.
Pfami PF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF000478. TP_PyNP. 1 hit.
SMARTi SM00941. PYNP_C. 1 hit.
[Graphical view ]
SUPFAMi SSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsi TIGR02645. ARCH_P_rylase. 1 hit.
PROSITEi PS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisA53.

Entry informationi

Entry nameiTYPH_RHOP5
AccessioniPrimary (citable) accession number: Q07J10
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 31, 2006
Last modified: October 1, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3