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Q07J10 (TYPH_RHOP5) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative thymidine phosphorylase

EC=2.4.2.4
Alternative name(s):
TdRPase
Gene names
Ordered Locus Names:RPE_4149
OrganismRhodopseudomonas palustris (strain BisA53) [Complete proteome] [HAMAP]
Taxonomic identifier316055 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length513 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_00703

Sequence similarities

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 513513Putative thymidine phosphorylase HAMAP-Rule MF_00703
PRO_0000314714

Sequences

Sequence LengthMass (Da)Tools
Q07J10 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 01A9C95320EF54B3

FASTA51354,877
        10         20         30         40         50         60 
MSPVDAARPQ LKIRQIHLDT GRENVAVISR HSKALRPEVF SGFSRVEIRR GNQSMLATLL 

        70         80         90        100        110        120 
ITDDNAMVGP DDLGLAEPAF RRFGEAAGSL VSVTPASPPA SLDAVRGKIQ GRTLTAPEIE 

       130        140        150        160        170        180 
AIVNDLARYR YSDMEIAAFL IGAARFMTSD ELLALVSAMA SVGTQLRWDR PVVVDKHCIG 

       190        200        210        220        230        240 
GIPGNRTSMV LVPIVAAHGL TIPKTSSRAI TSPAGTADTM EVLARVDVGV PEMKEIVAAC 

       250        260        270        280        290        300 
NGCLIWGGHV NLSPADDILI SVERPLCLDT REQMVASIMS KKLAAGSTHL LVDLPLGPSA 

       310        320        330        340        350        360 
KVISPIDAMR LRKLFEFVGD HFGIAVETIT TDGRQPIGNG IGPVLEAQDV MAVLGNDPKA 

       370        380        390        400        410        420 
PADLREKSLR LAGHLLEYDP NLRGGSGYAR ARELLESGAA LKQMQKIIDN QGPTNCRKDL 

       430        440        450        460        470        480 
GTLTTDIVAP RDGVVTGIDN LQLNRLARTA GAPIDKGAGI KLFKKVGDRV EQGEPLYRIY 

       490        500        510 
AFDPSEQELA VSAAEESSGY TVDGVHAFRE QVL 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisA53."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Kim E., Harwood C.S., Oda Y., Richardson P.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisA53.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000463 Genomic DNA. Translation: ABJ08074.1.
RefSeqYP_783054.1. NC_008435.1.

3D structure databases

ProteinModelPortalQ07J10.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316055.RPE_4149.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABJ08074; ABJ08074; RPE_4149.
GeneID4361842.
KEGGrpe:RPE_4149.
PATRIC23262942. VBIRhoPal93214_4200.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0213.
HOGENOMHOG000252767.
KOK00758.
OMADVWRRMI.
OrthoDBEOG61ZTGG.
ProtClustDBPRK04350.

Enzyme and pathway databases

BioCycRPAL316055:GHR9-4189-MONOMER.

Family and domain databases

Gene3D3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPMF_00703. Thymid_phosp_2.
InterProIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERPTHR10515. PTHR10515. 1 hit.
PfamPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFPIRSF000478. TP_PyNP. 1 hit.
SMARTSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTYPH_RHOP5
AccessionPrimary (citable) accession number: Q07J10
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 31, 2006
Last modified: February 19, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families