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Q07961

- ABDA_TRICA

UniProt

Q07961 - ABDA_TRICA

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Protein
Homeobox protein abdominal-A homolog
Gene
ABD-A
Organism
Tribolium castaneum (Red flour beetle)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi216 – 27560Homeobox
Add
BLAST

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. multicellular organismal development Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox protein abdominal-A homolog
Gene namesi
Name:ABD-A
OrganismiTribolium castaneum (Red flour beetle)
Taxonomic identifieri7070 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaColeopteraPolyphagaCucujiformiaTenebrionidaeTenebrionidae incertae sedisTribolium

Subcellular locationi

Nucleus Inferred

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 343343Homeobox protein abdominal-A homolog
PRO_0000200254Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi7070.Q07961.

Structurei

3D structure databases

ProteinModelPortaliQ07961.
SMRiQ07961. Positions 216-274.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi36 – 449Poly-Ser
Compositional biasi48 – 558Poly-Ser
Compositional biasi68 – 714Poly-His
Compositional biasi73 – 775Poly-Ala
Compositional biasi243 – 2464Poly-Arg
Compositional biasi297 – 3004Poly-Gln

Sequence similaritiesi

Belongs to the Antp homeobox family.

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiNOG328968.
InParanoidiQ07961.
KOiK09311.
OMAiKSCRYTA.
PhylomeDBiQ07961.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR022132. Abdominal-A.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF12407. Abdominal-A. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform Abd-AII (identifier: Q07961-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MSSKFIIDSM LPKYHQQFHH QQLFQSATTE APAAYSSSSP SGSSPQHSSS    50
SASTSPAARM YPYVSAAHHH HQAAAAAFGA AASGSMVPSF SSTASSALAA 100
AVDAATDKSC RYTAGLAANV TPADSMVNYT LGQHHHNGAA VSAASSVSAA 150
SASMAVAAQF YHQAASAVVD PLNSCSQPAA PGGQPIPDIP RYPWMSITDW 200
MSPFDRVVCG PNGCPRRRGR QTYTRFQTLE LEKEFHFNHY LTRRRRIEIA 250
HALCLTERQI KIWFQNRRMK LKKELRAVKE INEQARRERE EQERHKQQQQ 300
EKQQKIEQQT HSSIHQHHHD PMKMSLDKSG GSDLLKAVSK VPT 343
Length:343
Mass (Da):37,772
Last modified:July 15, 1999 - v2
Checksum:iD5CE73A71CFECE48
GO
Isoform Abd-AI (identifier: Q07961-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-59: Missing.

Show »
Length:284
Mass (Da):31,491
Checksum:iDA6CD4A182BF36B8
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 5959Missing in isoform Abd-AI.
VSP_002395Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF017415 mRNA. Translation: AAB70262.1.
AF017415 mRNA. Translation: AAB70263.1.
AF017414 Genomic DNA. Translation: AAB70261.1.
AF017414 Genomic DNA. Translation: AAB70260.1.
X72339 Genomic DNA. Translation: CAA51066.1.
RefSeqiNP_001034518.1. NM_001039429.1. [Q07961-1]
UniGeneiTca.5738.

Genome annotation databases

GeneIDi641595.
KEGGitca:641595.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF017415 mRNA. Translation: AAB70262.1 .
AF017415 mRNA. Translation: AAB70263.1 .
AF017414 Genomic DNA. Translation: AAB70261.1 .
AF017414 Genomic DNA. Translation: AAB70260.1 .
X72339 Genomic DNA. Translation: CAA51066.1 .
RefSeqi NP_001034518.1. NM_001039429.1. [Q07961-1 ]
UniGenei Tca.5738.

3D structure databases

ProteinModelPortali Q07961.
SMRi Q07961. Positions 216-274.
ModBasei Search...

Protein-protein interaction databases

STRINGi 7070.Q07961.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 641595.
KEGGi tca:641595.

Organism-specific databases

CTDi 42037.

Phylogenomic databases

eggNOGi NOG328968.
InParanoidi Q07961.
KOi K09311.
OMAi KSCRYTA.
PhylomeDBi Q07961.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
InterProi IPR022132. Abdominal-A.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view ]
Pfami PF12407. Abdominal-A. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view ]
PRINTSi PR00024. HOMEOBOX.
SMARTi SM00389. HOX. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Brown S.
    Submitted (AUG-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
    Strain: Georgia.
  2. "The Tribolium homeotic gene Abdominal is homologous to abdominal-A of the Drosophila bithorax complex."
    Stuart J.J., Brown S.J., Beeman R.W., Denell R.E.
    Development 117:233-243(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 210-343.

Entry informationi

Entry nameiABDA_TRICA
AccessioniPrimary (citable) accession number: Q07961
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 15, 1999
Last modified: May 14, 2014
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Documents

  1. Vertebrate homeotic Hox proteins
    Nomenclature of vertebrate homeotic Hox proteins and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi