Q07837 (SLC31_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 140.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Neutral and basic amino acid transport protein rBAT Short name=NBAT Alternative name(s): B(0,+)-type amino acid transport protein D2h | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 685 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Involved in the high-affinity, sodium-independent transport of cystine and neutral and dibasic amino acids (system B(0,+)-like activity). May function as an activator of SLC7A9 and be involved in the high-affinity reabsorption of cystine in the kidney tubule. Ref.1 Ref.3 Ref.4 Ref.6 |
| Subunit structure | Disulfide-linked heterodimer with the amino acid transport protein SLC7A9. Ref.11 |
| Subcellular location | Membrane; Single-pass type II membrane protein Potential. |
| Tissue specificity | Predominantly expressed in the kidney, small intestine and pancreas. Weakly expressed in liver. Ref.1 Ref.3 |
| Involvement in disease | Cystinuria (CSNU) [MIM:220100]: An autosomal disorder characterized by impaired epithelial cell transport of cystine and dibasic amino acids (lysine, ornithine, and arginine) in the proximal renal tubule and gastrointestinal tract. The impaired renal reabsorption of cystine and its low solubility causes the formation of calculi in the urinary tract, resulting in obstructive uropathy, pyelonephritis, and, rarely, renal failure. Hypotonia-cystinuria syndrome (HCS) [MIM:606407]: Characterized generalized hypotonia at birth, nephrolithiasis, growth hormone deficiency, minor facial dysmorphism, failure to thrive, followed by hyperphagia and rapid weight gain in late childhood. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 685 | 685 | Neutral and basic amino acid transport protein rBAT | PRO_0000071950 | |||||
Regions | |||||||||
| Topological domain | 1 – 87 | 87 | Cytoplasmic Potential | ||||||
| Transmembrane | 88 – 108 | 21 | Helical; Signal-anchor for type II membrane protein; Potential | ||||||
| Topological domain | 109 – 685 | 577 | Extracellular Potential | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 214 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 261 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 332 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 495 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 513 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 575 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Natural variant | 122 | 1 | P → S in CSNU. Ref.18 | VAR_064040 | |||||
| Natural variant | 128 | 1 | P → Q in CSNU. Ref.15 | VAR_011420 | |||||
| Natural variant | 151 | 1 | Y → C in CSNU. Ref.19 | VAR_038200 | |||||
| Natural variant | 181 | 1 | R → Q in CSNU. Ref.14 | VAR_011421 | |||||
| Natural variant | 216 | 1 | T → M in CSNU. Ref.20 | VAR_022600 | |||||
| Natural variant | 253 | 1 | N → K in CSNU. Ref.19 | VAR_038201 | |||||
| Natural variant | 268 | 1 | E → K in CSNU; reduction in amino acid transport activity. Ref.17 | VAR_011422 | |||||
| Natural variant | 341 | 1 | T → A in CSNU; reduction in amino acid transport activity. Ref.17 | VAR_011423 | |||||
| Natural variant | 362 | 1 | R → C in CSNU. Ref.20 | VAR_022601 | |||||
| Natural variant | 362 | 1 | R → H in CSNU. Ref.19 | VAR_038202 | |||||
| Natural variant | 365 | 1 | R → W in CSNU. Ref.16 Ref.20 | VAR_011424 | |||||
| Natural variant | 398 | 1 | G → R in CSNU. Ref.19 | VAR_038203 | |||||
| Natural variant | 452 | 1 | R → W in CSNU. Ref.5 | VAR_011425 | |||||
| Natural variant | 461 | 1 | Y → H in CSNU. Ref.5 Ref.19 | VAR_011426 | |||||
| Natural variant | 467 | 1 | M → K in CSNU. Ref.14 | VAR_011428 | |||||
| Natural variant | 467 | 1 | M → T in CSNU; loss of 80% of amino acid transport activity. Ref.5 Ref.14 Ref.19 Ref.20 | VAR_011427 | |||||
| Natural variant | 481 | 1 | G → V in CSNU. Ref.19 | VAR_038204 | |||||
| Natural variant | 482 | 1 | E → K in CSNU. Ref.19 | VAR_038205 | |||||
| Natural variant | 508 | 1 | P → A in CSNU. Ref.20 | VAR_022602 | |||||
| Natural variant | 510 | 1 | Q → R in CSNU. Ref.19 | VAR_038206 | |||||
| Natural variant | 582 | 1 | Y → H in CSNU. Ref.16 | VAR_011429 | |||||
| Natural variant | 584 | 1 | R → T in CSNU. Ref.19 | VAR_038207 | |||||
| Natural variant | 599 | 1 | F → S in CSNU. Ref.19 | VAR_038208 | |||||
| Natural variant | 600 | 1 | G → E in CSNU. Ref.19 | VAR_038209 | |||||
| Natural variant | 615 | 1 | P → T in CSNU. Ref.14 | VAR_011430 | |||||
| Natural variant | 618 | 1 | M → I. Ref.1 Ref.4 Ref.5 Ref.6 Ref.10 Ref.16 Ref.19 Corresponds to variant rs698761 [ dbSNP | Ensembl ]. | VAR_011431 | |||||
| Natural variant | 648 | 1 | F → S in CSNU. Ref.16 | VAR_011432 | |||||
| Natural variant | 652 | 1 | T → R in CSNU. Ref.14 | VAR_011433 | |||||
| Natural variant | 678 | 1 | L → P in CSNU. Ref.14 | VAR_011434 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning and chromosomal localization of a human kidney cDNA involved in cystine, dibasic, and neutral amino acid transport." Lee W.-S., Wells R.G., Sabbag R.V., Mohandas T.K., Hediger M.A. J. Clin. Invest. 91:1959-1963(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, VARIANT ILE-618. Tissue: Kidney. |
| [2] | Lee W.-S., Wells R.G., Sabbag R.V., Mohandas T.K., Hediger M.A. Submitted (JUN-1993) to the EMBL/GenBank/DDBJ databases Cited for: SEQUENCE REVISION TO C-TERMINUS. |
| [3] | "Expression cloning of a human renal cDNA that induces high affinity transport of L-cystine shared with dibasic amino acids in Xenopus oocytes." Bertran J., Werner A., Chillaron J., Nunes V., Biber J., Testar X., Zorzano A., Estivill X., Murer H., Palacin M. J. Biol. Chem. 268:14842-14849(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY. Tissue: Kidney cortex. |
| [4] | "Effects of truncation of the COOH-terminal region of a Na+-independent neutral and basic amino acid transporter on amino acid transport in Xenopus oocytes." Miyamoto K., Segawa H., Tatsumi S., Katai K., Yamamoto H., Taketani Y., Haga H., Morita K., Takeda E. J. Biol. Chem. 271:16758-16763(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT ILE-618, FUNCTION. Tissue: Kidney cortex. |
| [5] | "Genomic organization of a human cystine transporter gene (SLC3A1) and identification of novel mutations causing cystinuria." Endsley J.K., Phillips J.A. III, Hruska K.A., Denneberg T., Carlson J., George A.L. Jr. Kidney Int. 51:1893-1899(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT ILE-618, VARIANTS CSNU TRP-452; HIS-461 AND THR-467. |
| [6] | "Human cystinuria-related transporter: localization and functional characterization." Mizoguchi K., Cha S.H., Chairoungdua A., Kim J.Y., Shigeta Y., Matsuo H., Fukushima J., Awa Y., Akakura K., Goya T., Ito H., Endou H., Kanai Y. Kidney Int. 59:1821-1833(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, VARIANT ILE-618. Tissue: Kidney. |
| [7] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Amygdala. |
| [8] | Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S. Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Kidney. |
| [9] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [10] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT ILE-618. Tissue: Brain and Kidney. |
| [11] | "Luminal heterodimeric amino acid transporter defective in cystinuria." Pfeiffer R., Loffing J., Rossier G., Bauch C., Meier C., Eggermann T., Loffing-Cueni D., Kuehn L.C., Verrey F. Mol. Biol. Cell 10:4135-4147(1999) [PubMed] [Europe PMC] [Abstract] Cited for: SUBUNIT. |
| [12] | "Genetic heterogeneity in cystinuria: the SLC3A1 gene is linked to type I but not to type III cystinuria." Calonge M.J., Volpini V., Bisceglia L., Rousaud F., de Sanctis L., Beccia E., Zelante L., Testar X., Zorzano A., Estivill X., Gasparini P., Nunes V., Palacin M. Proc. Natl. Acad. Sci. U.S.A. 92:9667-9671(1995) [PubMed] [Europe PMC] [Abstract] Cited for: DISEASE. |
| [13] | "Deletion of PREPL, a gene encoding a putative serine oligopeptidase, in patients with hypotonia-cystinuria syndrome." Jaeken J., Martens K., Francois I., Eyskens F., Lecointre C., Derua R., Meulemans S., Slootstra J.W., Waelkens E., de Zegher F., Creemers J.W.M., Matthijs G. Am. J. Hum. Genet. 78:38-51(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN HCS. |
| [14] | "Cystinuria caused by mutations in rBAT, a gene involved in the transport of cystine." Calonge M.J., Gasparini P., Chillaron J., Chillon M., Gallucci M., Rousaud F., Zelante L., Testar X., Dallapiccola B., Di Silverio F., Barcelo P., Estivill X., Zorzano A., Nunes V., Palacin M. Nat. Genet. 6:420-425(1994) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS CSNU GLN-181; LYS-467; THR-467; THR-615; ARG-652 AND PRO-678, CHARACTERIZATION OF VARIANT THR-467. |
| [15] | "Mutations in the SLC3A1 transporter gene in cystinuria." Pras E., Raben N., Golomb E., Arber N., Aksentijevich I., Schapiro J.M., Harel D., Katz G., Liberman U., Pras M., Kastner D.L. Am. J. Hum. Genet. 56:1297-1303(1995) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT CSNU GLN-128. |
| [16] | "Molecular genetics of cystinuria: identification of four new mutations and seven polymorphisms, and evidence for genetic heterogeneity." Gasparini P., Calonge M.J., Bisceglia L., Purroy J., Dianzani I., Notarangelo A., Rousaud F., Gallucci M., Testar X., Ponzone A., Estivill X., Zorzano A., Palacin M., Nunes V., Zelante L. Am. J. Hum. Genet. 57:781-788(1995) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS CSNU TRP-365; HIS-582 AND SER-648, VARIANT ILE-618. |
| [17] | "Mutations of the basic amino acid transporter gene associated with cystinuria." Miyamoto K., Katai K., Tatsumi S., Sone K., Segawa H., Yamamoto H., Taketani Y., Takada K., Morita K., Kanayama H., Kagawa S., Takeda E. Biochem. J. 310:951-955(1995) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS CSNU LYS-268 AND ALA-341, CHARACTERIZATION OF VARIANTS CSNU LYS-268 AND ALA-341. |
| [18] | "Identification of two novel mutations [P122S (364C>T) and 1601delAC] in the SLC3A1 gene in type I cystinurics." Gitomer W.L., Reed B.Y., Pak C.Y.C. Hum. Mutat. 15:390-390(2000) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT CSNU SER-122. |
| [19] | "Identification of 12 novel mutations in the SLC3A1 gene in Swedish cystinuria patients." Harnevik L., Fjellstedt E., Molbaek A., Tiselius H.-G., Denneberg T., Soederkvist P. Hum. Mutat. 18:516-525(2001) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS CSNU CYS-151; LYS-253; HIS-362; ARG-398; HIS-461; THR-467; VAL-481; LYS-482; ARG-510; THR-584; SER-599 AND GLU-600, VARIANT ILE-618. |
| [20] | "Cystinuria in children: distribution and frequencies of mutations in the SLC3A1 and SLC7A9 genes." Botzenhart E., Vester U., Schmidt C., Hesse A., Halber M., Wagner C., Lang F., Hoyer P., Zerres K., Eggermann T. Kidney Int. 62:1136-1142(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS CSNU MET-216; CYS-362; TRP-365; THR-467 AND ALA-508. |
| + | Additional computationally mapped references. |
Web resources
| GeneReviews |
| Cysdb Cystinuria database |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | M95548 mRNA. Translation: AAA35500.1. L11696 mRNA. Translation: AAA81778.1. D82326 mRNA. Translation: BAA11541.1. U60819 U60815 Genomic DNA. Translation: AAB39829.1.AB033549 mRNA. Translation: BAB16841.1. AK223146 mRNA. Translation: BAD96866.1. AK289636 mRNA. Translation: BAF82325.1. AC013717 Genomic DNA. Translation: AAX88955.1. BC022386 mRNA. Translation: AAH22386.1. BC093624 mRNA. Translation: AAH93624.1. BC093626 mRNA. Translation: AAH93626.1. |
| IPI | IPI00029268. |
| PIR | A47102. |
| RefSeq | NP_000332.2. NM_000341.3. |
| UniGene | Hs.112916. |
3D structure databases | |
| ProteinModelPortal | Q07837. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000260649. |
Protein family/group databases | |
| CAZy | GH13. Glycoside Hydrolase Family 13. |
PTM databases | |
| PhosphoSite | Q07837. |
Polymorphism databases | |
| DMDM | 67472674. |
Proteomic databases | |
| PaxDb | Q07837. |
| PRIDE | Q07837. |
Protocols and materials databases | |
| DNASU | 6519. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000260649; ENSP00000260649; ENSG00000138079. |
| GeneID | 6519. |
| KEGG | hsa:6519. |
| UCSC | uc002ruc.4. human. |
Organism-specific databases | |
| CTD | 6519. |
| GeneCards | GC02P044414. |
| HGNC | HGNC:11025. SLC3A1. |
| HPA | HPA038360. |
| MIM | 104614. gene. 220100. phenotype. 606407. phenotype. |
| neXtProt | NX_Q07837. |
| Orphanet | 163693. 2p21 microdeletion syndrome. 238523. Atypical hypotonia - cystinuria syndrome. 93612. Cystinuria type A. 163690. Hypotonia - cystinuria syndrome. |
| PharmGKB | PA35893. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG0366. |
| HOGENOM | HOG000220640. |
| HOVERGEN | HBG053002. |
| InParanoid | Q07837. |
| KO | K14210. |
| OMA | QWQGQTL. |
| OrthoDB | EOG47H5PM. |
Enzyme and pathway databases | |
| Reactome | REACT_15518. Transmembrane transport of small molecules. REACT_19419. Amino acid and oligopeptide SLC transporters. |
Gene expression databases | |
| ArrayExpress | Q07837. |
| Bgee | Q07837. |
| CleanEx | HS_SLC3A1. |
| Genevestigator | Q07837. |
| GermOnline | ENSG00000138079. Homo sapiens. |
Family and domain databases | |
| Gene3D | 3.20.20.80. 2 hits. |
| InterPro | IPR015902. Glyco_hydro_13. IPR006047. Glyco_hydro_13_cat_dom. IPR006589. Glyco_hydro_13_sub_cat_dom. IPR013781. Glyco_hydro_catalytic_dom. IPR017853. Glycoside_hydrolase_SF. [Graphical view] |
| PANTHER | PTHR10357. PTHR10357. 1 hit. |
| Pfam | PF00128. Alpha-amylase. 1 hit. [Graphical view] |
| SMART | SM00642. Aamy. 1 hit. [Graphical view] |
| SUPFAM | SSF51445. Glyco_hydro_cat. 1 hit. |
| ProtoNet | Search... |
Other | |
| ChiTaRS | SLC3A1. human. |
| DrugBank | DB00138. L-Cystine. |
| GenomeRNAi | 6519. |
| NextBio | 25349. |
| SOURCE | Search... |
Entry information
| Entry name | SLC31_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q07837 Secondary accession number(s): A8K0S1 Q52M94 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |

Clusters with
