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Protein

Chitooligosaccharide deacetylase

Gene

nodB

Organism
Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei22Proton acceptorBy similarity1
Metal bindingi73Divalent metal cation; via tele nitrogenBy similarity1
Metal bindingi77Divalent metal cation; via tele nitrogenBy similarity1
Sitei142Raises pKa of active site HisBy similarity1
Active sitei168Proton donorBy similarity1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Nodulation

Keywords - Ligandi

Metal-binding

Enzyme and pathway databases

BioCyciACAU438753:GJF3-3862-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Chitooligosaccharide deacetylase (EC:3.5.1.-)
Alternative name(s):
Nodulation protein B
Gene namesi
Name:nodB
Ordered Locus Names:AZC_3817
OrganismiAzorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571)
Taxonomic identifieri438753 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeAzorhizobium
Proteomesi
  • UP000000270 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001727461 – 210Chitooligosaccharide deacetylaseAdd BLAST210

Interactioni

Protein-protein interaction databases

STRINGi438753.AZC_3817.

Structurei

3D structure databases

ProteinModelPortaliQ07740.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini15 – 207NodB homologyPROSITE-ProRule annotationAdd BLAST193

Sequence similaritiesi

Belongs to the polysaccharide deacetylase family.Curated
Contains 1 NodB homology domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108ZJ4. Bacteria.
COG0726. LUCA.
HOGENOMiHOG000260719.
KOiK14659.
OMAiIRAPYGI.
OrthoDBiPOG091H02KS.

Family and domain databases

Gene3Di3.20.20.370. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
IPR026402. Nodulat_NodB.
[Graphical view]
PfamiPF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
TIGRFAMsiTIGR04243. nodulat_NodB. 1 hit.
PROSITEiPS51677. NODB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q07740-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVLGQAARI TQNQSSIYIT FDDGPHPSVT PAVCEILREH SALATFFQIG
60 70 80 90 100
RFAKEYPSIS RQCQLDGHAI GNHTFDHPNL QDRAGEEVEY QISSAQKCLE
110 120 130 140 150
HICGRGFVRH FRAPYGAWST QILNVVNKIG LRPVSWSVDP RDWEAPRIEN
160 170 180 190 200
LINEILDNAR PGSIILLHDG CPPDEAAMWD VRGGRAQTLA ALRYVVPALQ
210
ARGFALQPLP
Length:210
Mass (Da):23,348
Last modified:February 26, 2008 - v2
Checksum:i2915069D19E46091
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti44 – 45AT → TA in AAB51163 (PubMed:2615763).Curated2
Sequence conflicti53A → T in AAB51163 (PubMed:2615763).Curated1
Sequence conflicti137S → P in AAB51163 (PubMed:2615763).Curated1
Sequence conflicti162G → S in AAB51163 (PubMed:2615763).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L18897 Genomic DNA. Translation: AAB51163.1.
AP009384 Genomic DNA. Translation: BAF89815.1.
PIRiJQ0394.

Genome annotation databases

EnsemblBacteriaiBAF89815; BAF89815; AZC_3817.
KEGGiazc:AZC_3817.
PATRICi21024489. VBIAzoCau17976_3984.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L18897 Genomic DNA. Translation: AAB51163.1.
AP009384 Genomic DNA. Translation: BAF89815.1.
PIRiJQ0394.

3D structure databases

ProteinModelPortaliQ07740.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi438753.AZC_3817.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAF89815; BAF89815; AZC_3817.
KEGGiazc:AZC_3817.
PATRICi21024489. VBIAzoCau17976_3984.

Phylogenomic databases

eggNOGiENOG4108ZJ4. Bacteria.
COG0726. LUCA.
HOGENOMiHOG000260719.
KOiK14659.
OMAiIRAPYGI.
OrthoDBiPOG091H02KS.

Enzyme and pathway databases

BioCyciACAU438753:GJF3-3862-MONOMER.

Family and domain databases

Gene3Di3.20.20.370. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
IPR026402. Nodulat_NodB.
[Graphical view]
PfamiPF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
TIGRFAMsiTIGR04243. nodulat_NodB. 1 hit.
PROSITEiPS51677. NODB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiNODB_AZOC5
AccessioniPrimary (citable) accession number: Q07740
Secondary accession number(s): A8IP10
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: February 26, 2008
Last modified: September 7, 2016
This is version 85 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.