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Q07362

- PBP4_YEAST

UniProt

Q07362 - PBP4_YEAST

Protein

Protein PBP4

Gene

PBP4

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 76 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    BioCyciYEAST:G3O-29470-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein PBP4
    Alternative name(s):
    PBP1-binding protein 4
    Gene namesi
    Name:PBP4
    Ordered Locus Names:YDL053C
    ORF Names:D2574
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome IV

    Organism-specific databases

    CYGDiYDL053c.
    SGDiS000002211. PBP4.

    Subcellular locationi

    Cytoplasm 1 Publication. Nucleus 1 Publication

    GO - Cellular componenti

    1. cytoplasmic stress granule Source: SGD
    2. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm, Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 185185Protein PBP4PRO_0000262746Add
    BLAST

    Proteomic databases

    MaxQBiQ07362.
    PaxDbiQ07362.
    PeptideAtlasiQ07362.

    Expressioni

    Gene expression databases

    GenevestigatoriQ07362.

    Interactioni

    Subunit structurei

    Interacts with IGO1, LSM12 and PBP1.3 Publications

    Protein-protein interaction databases

    BioGridi32006. 61 interactions.
    DIPiDIP-5229N.
    IntActiQ07362. 11 interactions.
    MINTiMINT-536916.
    STRINGi4932.YDL053C.

    Structurei

    3D structure databases

    ProteinModelPortaliQ07362.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi56 – 627Poly-Gln

    Phylogenomic databases

    eggNOGiNOG87662.
    OMAiAPPANIK.
    OrthoDBiEOG75XGZJ.

    Sequencei

    Sequence statusi: Complete.

    Q07362-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTTTSTTSVD GRTSSTLKAT LSASGPNSNG PTPAVLPQKP KLTGWAQAAA    50
    KALPRQQQQQ QQARKDDSVA VQPANTKTKT IASTAPPANI KGSSTANGSS 100
    TNKKFKRANK QPYNREEVRS YMHKLFQSYT AGEKSHSMKT YKQVLSETAS 150
    GRVSTATDWG TVSSSKNKNK KYGCLSDIAK VLRNQ 185
    Length:185
    Mass (Da):19,881
    Last modified:November 1, 1996 - v1
    Checksum:i516811BEF07EC37D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z74101 Genomic DNA. Translation: CAA98615.1.
    BK006938 Genomic DNA. Translation: DAA11803.1.
    PIRiS67588.
    RefSeqiNP_010230.1. NM_001180112.1.

    Genome annotation databases

    EnsemblFungiiYDL053C; YDL053C; YDL053C.
    GeneIDi851507.
    KEGGisce:YDL053C.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z74101 Genomic DNA. Translation: CAA98615.1 .
    BK006938 Genomic DNA. Translation: DAA11803.1 .
    PIRi S67588.
    RefSeqi NP_010230.1. NM_001180112.1.

    3D structure databases

    ProteinModelPortali Q07362.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 32006. 61 interactions.
    DIPi DIP-5229N.
    IntActi Q07362. 11 interactions.
    MINTi MINT-536916.
    STRINGi 4932.YDL053C.

    Proteomic databases

    MaxQBi Q07362.
    PaxDbi Q07362.
    PeptideAtlasi Q07362.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YDL053C ; YDL053C ; YDL053C .
    GeneIDi 851507.
    KEGGi sce:YDL053C.

    Organism-specific databases

    CYGDi YDL053c.
    SGDi S000002211. PBP4.

    Phylogenomic databases

    eggNOGi NOG87662.
    OMAi APPANIK.
    OrthoDBi EOG75XGZJ.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-29470-MONOMER.

    Miscellaneous databases

    NextBioi 968863.

    Gene expression databases

    Genevestigatori Q07362.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "The nucleotide sequence of Saccharomyces cerevisiae chromosome IV."
      Jacq C., Alt-Moerbe J., Andre B., Arnold W., Bahr A., Ballesta J.P.G., Bargues M., Baron L., Becker A., Biteau N., Bloecker H., Blugeon C., Boskovic J., Brandt P., Brueckner M., Buitrago M.J., Coster F., Delaveau T.
      , del Rey F., Dujon B., Eide L.G., Garcia-Cantalejo J.M., Goffeau A., Gomez-Peris A., Granotier C., Hanemann V., Hankeln T., Hoheisel J.D., Jaeger W., Jimenez A., Jonniaux J.-L., Kraemer C., Kuester H., Laamanen P., Legros Y., Louis E.J., Moeller-Rieker S., Monnet A., Moro M., Mueller-Auer S., Nussbaumer B., Paricio N., Paulin L., Perea J., Perez-Alonso M., Perez-Ortin J.E., Pohl T.M., Prydz H., Purnelle B., Rasmussen S.W., Remacha M.A., Revuelta J.L., Rieger M., Salom D., Saluz H.P., Saiz J.E., Saren A.-M., Schaefer M., Scharfe M., Schmidt E.R., Schneider C., Scholler P., Schwarz S., Soler-Mira A., Urrestarazu L.A., Verhasselt P., Vissers S., Voet M., Volckaert G., Wagner G., Wambutt R., Wedler E., Wedler H., Woelfl S., Harris D.E., Bowman S., Brown D., Churcher C.M., Connor R., Dedman K., Gentles S., Hamlin N., Hunt S., Jones L., McDonald S., Murphy L.D., Niblett D., Odell C., Oliver K., Rajandream M.A., Richards C., Shore L., Walsh S.V., Barrell B.G., Dietrich F.S., Mulligan J.T., Allen E., Araujo R., Aviles E., Berno A., Carpenter J., Chen E., Cherry J.M., Chung E., Duncan M., Hunicke-Smith S., Hyman R.W., Komp C., Lashkari D., Lew H., Lin D., Mosedale D., Nakahara K., Namath A., Oefner P., Oh C., Petel F.X., Roberts D., Schramm S., Schroeder M., Shogren T., Shroff N., Winant A., Yelton M.A., Botstein D., Davis R.W., Johnston M., Andrews S., Brinkman R., Cooper J., Ding H., Du Z., Favello A., Fulton L., Gattung S., Greco T., Hallsworth K., Hawkins J., Hillier L.W., Jier M., Johnson D., Johnston L., Kirsten J., Kucaba T., Langston Y., Latreille P., Le T., Mardis E., Menezes S., Miller N., Nhan M., Pauley A., Peluso D., Rifkin L., Riles L., Taich A., Trevaskis E., Vignati D., Wilcox L., Wohldman P., Vaudin M., Wilson R., Waterston R., Albermann K., Hani J., Heumann K., Kleine K., Mewes H.-W., Zollner A., Zaccaria P.
      Nature 387:75-78(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    4. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
    5. "Identification of factors regulating poly(A) tail synthesis and maturation."
      Mangus D.A., Smith M.M., McSweeney J.M., Jacobson A.
      Mol. Cell. Biol. 24:4196-4206(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH PBP1.
    6. "Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes."
      Fleischer T.C., Weaver C.M., McAfee K.J., Jennings J.L., Link A.J.
      Genes Dev. 20:1294-1307(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH LSM12 AND PBP1, IDENTIFICATION BY MASS SPECTROMETRY.
    7. "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution."
      Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.
      Science 325:1682-1686(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    8. "Initiation of the TORC1-regulated G0 program requires Igo1/2, which license specific mRNAs to evade degradation via the 5'-3' mRNA decay pathway."
      Talarek N., Cameroni E., Jaquenoud M., Luo X., Bontron S., Lippman S., Devgan G., Snyder M., Broach J.R., De Virgilio C.
      Mol. Cell 38:345-355(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH IGO1.
    9. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiPBP4_YEAST
    AccessioniPrimary (citable) accession number: Q07362
    Secondary accession number(s): D6VRU3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 76 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Present with 1560 molecules/cell in log phase SD medium.1 Publication

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    2. Yeast chromosome IV
      Yeast (Saccharomyces cerevisiae) chromosome IV: entries and gene names

    External Data

    Dasty 3