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Protein

Transforming growth factor beta-3

Gene

Tgfb3

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Involved in embryogenesis and cell differentiation.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Growth factor, Mitogen

Enzyme and pathway databases

ReactomeiREACT_288006. Platelet degranulation.
REACT_293644. ECM proteoglycans.
REACT_337278. Molecules associated with elastic fibres.

Names & Taxonomyi

Protein namesi
Recommended name:
Transforming growth factor beta-3
Short name:
TGF-beta-3
Cleaved into the following chain:
Gene namesi
Name:Tgfb3
Synonyms:Tgf-b3
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 6

Organism-specific databases

RGDi3851. Tgfb3.

Subcellular locationi

GO - Cellular componenti

  • cell surface Source: RGD
  • cytoplasm Source: RGD
  • extracellular matrix Source: AgBase
  • extracellular space Source: RGD
  • neuronal cell body Source: RGD
  • nucleus Source: RGD
  • proteinaceous extracellular matrix Source: Ensembl
  • secretory granule Source: RGD
  • T-tubule Source: RGD
Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence AnalysisAdd
BLAST
Chaini24 – 300277Latency-associated peptideBy similarityPRO_0000033802Add
BLAST
Chaini301 – 412112Transforming growth factor beta-3PRO_0000033803Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi74 – 741N-linked (GlcNAc...)Sequence Analysis
Glycosylationi135 – 1351N-linked (GlcNAc...)Sequence Analysis
Glycosylationi142 – 1421N-linked (GlcNAc...)Sequence Analysis
Disulfide bondi307 ↔ 316By similarity
Disulfide bondi315 ↔ 378By similarity
Disulfide bondi344 ↔ 409By similarity
Disulfide bondi348 ↔ 411By similarity
Disulfide bondi377 – 377InterchainBy similarity

Post-translational modificationi

The precursor is cleaved into mature TGF-beta-3 and LAP, which remains non-covalently linked to mature TGF-beta-3 rendering it inactive.By similarity

Keywords - PTMi

Cleavage on pair of basic residues, Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ07258.
PRIDEiQ07258.

Expressioni

Gene expression databases

GenevisibleiQ07258. RN.

Interactioni

Subunit structurei

Homodimer; disulfide-linked. Interacts with ASPN (By similarity).By similarity

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013516.

Structurei

3D structure databases

ProteinModelPortaliQ07258.
SMRiQ07258. Positions 301-412.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi261 – 2633Cell attachment siteSequence Analysis

Sequence similaritiesi

Belongs to the TGF-beta family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG269146.
GeneTreeiENSGT00760000119112.
HOGENOMiHOG000290198.
HOVERGENiHBG074115.
InParanoidiQ07258.
KOiK13377.
OMAiPEPSVMT.
OrthoDBiEOG70GMFT.
PhylomeDBiQ07258.
TreeFamiTF351793.

Family and domain databases

Gene3Di2.10.90.10. 1 hit.
InterProiIPR029034. Cystine-knot_cytokine.
IPR001839. TGF-b_C.
IPR001111. TGF-b_N.
IPR016319. TGF-beta.
IPR015615. TGF-beta-rel.
IPR015618. TGFB3.
IPR017948. TGFb_CS.
[Graphical view]
PANTHERiPTHR11848. PTHR11848. 1 hit.
PfamiPF00019. TGF_beta. 1 hit.
PF00688. TGFb_propeptide. 1 hit.
[Graphical view]
PIRSFiPIRSF001787. TGF-beta. 1 hit.
PRINTSiPR01423. TGFBETA.
PR01426. TGFBETA3.
SMARTiSM00204. TGFB. 1 hit.
[Graphical view]
SUPFAMiSSF57501. SSF57501. 1 hit.
PROSITEiPS00250. TGF_BETA_1. 1 hit.
PS51362. TGF_BETA_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q07258-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKMHLQRALV VLALLNLATV SLSLSTCTTL DFGHIKKKRV EAIRGQILSK
60 70 80 90 100
LRLTSPPEPS VMTHVPYQVL ALYNSTRELL EEMHGEREEG CTQETSESEY
110 120 130 140 150
YAKEIHKFDM IQGLAEHNEL AVCPKGITSK VFRFNVSSVE KNGTNLFRAE
160 170 180 190 200
FRVLRVPNPS SKRTEQRIEL FQILRPDEHI AKQRYIGGKN LPTRGTAEWL
210 220 230 240 250
SFDVTDTVRE WLLRRESNLG LEISIHCPCH TFQPNGDILE NVHEVMEIKF
260 270 280 290 300
KGVDNEDDHG RGDLGRLKKQ KDHHNPHLIL MMIPPHRLDS PGQGGQRKKR
310 320 330 340 350
ALDTNYCFRN LEENCCVRPL YIDFRQDLGW KWVHEPKGYY ANFCSGPCPY
360 370 380 390 400
LRSSDTTHST VLGLYNTLNP EASASPCCVP QDLEPLTILY YVGRTPKVEQ
410
LSNMVVKSCK CS
Length:412
Mass (Da):47,116
Last modified:February 1, 1996 - v2
Checksum:i24FD7D899090AA9D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U03491 mRNA. Translation: AAA67915.1.
BC092195 mRNA. Translation: AAH92195.1.
X71903 mRNA. Translation: CAA50722.1.
PIRiA55706.
RefSeqiNP_037306.1. NM_013174.2.
UniGeneiRn.7018.

Genome annotation databases

EnsembliENSRNOT00000013516; ENSRNOP00000013516; ENSRNOG00000009867.
GeneIDi25717.
KEGGirno:25717.
UCSCiRGD:3851. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U03491 mRNA. Translation: AAA67915.1.
BC092195 mRNA. Translation: AAH92195.1.
X71903 mRNA. Translation: CAA50722.1.
PIRiA55706.
RefSeqiNP_037306.1. NM_013174.2.
UniGeneiRn.7018.

3D structure databases

ProteinModelPortaliQ07258.
SMRiQ07258. Positions 301-412.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013516.

Proteomic databases

PaxDbiQ07258.
PRIDEiQ07258.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000013516; ENSRNOP00000013516; ENSRNOG00000009867.
GeneIDi25717.
KEGGirno:25717.
UCSCiRGD:3851. rat.

Organism-specific databases

CTDi7043.
RGDi3851. Tgfb3.

Phylogenomic databases

eggNOGiNOG269146.
GeneTreeiENSGT00760000119112.
HOGENOMiHOG000290198.
HOVERGENiHBG074115.
InParanoidiQ07258.
KOiK13377.
OMAiPEPSVMT.
OrthoDBiEOG70GMFT.
PhylomeDBiQ07258.
TreeFamiTF351793.

Enzyme and pathway databases

ReactomeiREACT_288006. Platelet degranulation.
REACT_293644. ECM proteoglycans.
REACT_337278. Molecules associated with elastic fibres.

Miscellaneous databases

NextBioi607801.
PROiQ07258.

Gene expression databases

GenevisibleiQ07258. RN.

Family and domain databases

Gene3Di2.10.90.10. 1 hit.
InterProiIPR029034. Cystine-knot_cytokine.
IPR001839. TGF-b_C.
IPR001111. TGF-b_N.
IPR016319. TGF-beta.
IPR015615. TGF-beta-rel.
IPR015618. TGFB3.
IPR017948. TGFb_CS.
[Graphical view]
PANTHERiPTHR11848. PTHR11848. 1 hit.
PfamiPF00019. TGF_beta. 1 hit.
PF00688. TGFb_propeptide. 1 hit.
[Graphical view]
PIRSFiPIRSF001787. TGF-beta. 1 hit.
PRINTSiPR01423. TGFBETA.
PR01426. TGFBETA3.
SMARTiSM00204. TGFB. 1 hit.
[Graphical view]
SUPFAMiSSF57501. SSF57501. 1 hit.
PROSITEiPS00250. TGF_BETA_1. 1 hit.
PS51362. TGF_BETA_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and expression of glucocorticoid-induced genes in fetal rat lung fibroblasts. Transforming growth factor-beta 3."
    Wang J., Kuliszewski M., Yee W., Sedlackova L., Xu J., Tseu I., Post M.
    J. Biol. Chem. 270:2722-2728(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Wistar.
    Tissue: Lung.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain.
  3. "A role for TGF-beta in oligodendrocyte differentiation."
    McKinnon R.D., Piras G., Ida J., Dubois-Dalq M.
    J. Cell Biol. 121:1397-1407(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 159-213.

Entry informationi

Entry nameiTGFB3_RAT
AccessioniPrimary (citable) accession number: Q07258
Secondary accession number(s): Q56A31
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: February 1, 1996
Last modified: July 22, 2015
This is version 120 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.