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Q07232 (ATPB_BUCAP) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 111. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
ATP synthase subunit beta

EC=3.6.3.14
Alternative name(s):
ATP synthase F1 sector subunit beta
F-ATPase subunit beta
Gene names
Name:atpD
Synonyms:uncD
Ordered Locus Names:BUsg_008
OrganismBuchnera aphidicola subsp. Schizaphis graminum (strain Sg) [Complete proteome] [HAMAP]
Taxonomic identifier198804 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera

Protein attributes

Sequence length466 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits By similarity. HAMAP-Rule MF_01347

Catalytic activity

ATP + H2O + H+(In) = ADP + phosphate + H+(Out). HAMAP-Rule MF_01347

Subunit structure

F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a1, b2 and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF1 is attached to CF0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains By similarity.

Subcellular location

Cell membrane; Peripheral membrane protein By similarity HAMAP-Rule MF_01347.

Sequence similarities

Belongs to the ATPase alpha/beta chains family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 466466ATP synthase subunit beta HAMAP-Rule MF_01347
PRO_0000144427

Regions

Nucleotide binding156 – 1638ATP By similarity

Experimental info

Sequence conflict2801E → G Ref.4
Sequence conflict2801E → G Ref.5

Sequences

Sequence LengthMass (Da)Tools
Q07232 [UniParc].

Last modified December 15, 1998. Version 2.
Checksum: F0A1570A2DA470D9

FASTA46651,349
        10         20         30         40         50         60 
MIATGKIIQI IGAVVDVEFD QNSVPKIYNA LEVKNKKIQL ILEVQQQLGA GIVRTIAMGS 

        70         80         90        100        110        120 
TNGLKRGLIV IDLGHYIKVP VGQATLGRII NVLGKTIDNK GPLKNLDNSK LEYWEIHRSA 

       130        140        150        160        170        180 
PSYQEQASSQ EILETGIKVI DLICPFSKGG KVGLFGGAGV GKTVNMMELI RNIAIEHSGY 

       190        200        210        220        230        240 
SVFTGVGERT REGNDFYHEM KDSKVLDKVS LVYGQMNEPP GNRLRVAFTG LTIAEKFRDE 

       250        260        270        280        290        300 
GRDVLLFIDN IYRYTLAGTE VSALLGRMPS AVGYQPTLAE EMGLLQERIT STKEGSITSV 

       310        320        330        340        350        360 
QAVYVPADDL TDPSPATTFA HLDSTVTLSR QIAALGIYPA IDPLNSTSRQ LDPYIVGDEH 

       370        380        390        400        410        420 
YDTARGVQSI LQRYQELKDI IAILGMDELS QEDKILVSRA RKIQRFLSQP FFVAEVFTGF 

       430        440        450        460 
PGKYVSLKDN IRAFKGIIGG EFDNLPEQAF YMVGTIEEVI KKAKLL 

« Hide

References

« Hide 'large scale' references
[1]"The (F1F0) ATP synthase of Buchnera aphidicola (endosymbiont of aphids): genetic analysis of the putative ATP operon."
Clark M.A., Baumann P.
Curr. Microbiol. 35:84-89(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho."
Clark M.A., Baumann L., Baumann P.
Curr. Microbiol. 36:158-163(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"50 million years of genomic stasis in endosymbiotic bacteria."
Tamas I., Klasson L., Canbaeck B., Naeslund A.K., Eriksson A.-S., Wernegreen J.J., Sandstroem J.P., Moran N.A., Andersson S.G.E.
Science 296:2376-2379(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Sg.
[4]"Aspects of energy-yielding metabolism in the aphid, Schizaphis graminum, and its endosymbiont: detection of gene fragments potentially coding for the ATP synthase beta-subunit and glyceraldehyde-3-phosphate dehydrogenase."
Clark M.A., Baumann P.
Curr. Microbiol. 26:233-237(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 164-314.
[5]"Effect of selection and random drift in the evolution of aphids endosymbionts."
Latorre A., Buades C., Sabater B., Moya A.
Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 164-314.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF008210 Genomic DNA. Translation: AAC38110.1.
AE013218 Genomic DNA. Translation: AAM67580.1.
Z15147 Genomic DNA. Translation: CAA78853.1.
AJ247128 Genomic DNA. Translation: CAB95753.1.
PIRS37647.
RefSeqNP_660369.1. NC_004061.1.

3D structure databases

ProteinModelPortalQ07232.
SMRQ07232. Positions 5-466.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING198804.BUsg008.

Proteomic databases

PRIDEQ07232.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAM67580; AAM67580; BUsg_008.
GeneID1005596.
KEGGbas:BUsg008.
PATRIC21246771. VBIBucAph100086_0008.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0055.
KOK02112.
OMAKYLSQPF.
OrthoDBEOG6HQSP3.

Enzyme and pathway databases

BioCycBAPH198804:GHMG-8-MONOMER.

Family and domain databases

Gene3D1.10.1140.10. 1 hit.
3.40.50.300. 1 hit.
HAMAPMF_01347. ATP_synth_beta_bact.
InterProIPR003593. AAA+_ATPase.
IPR020003. ATPase_a/bsu_AS.
IPR005722. ATPase_F1-cplx_bsu.
IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
IPR004100. ATPase_F1_a/bsu_N.
IPR024034. ATPase_F1_bsu/V1_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PANTHERPTHR15184:SF8. PTHR15184:SF8. 1 hit.
PfamPF00006. ATP-synt_ab. 1 hit.
PF00306. ATP-synt_ab_C. 1 hit.
PF02874. ATP-synt_ab_N. 1 hit.
[Graphical view]
SMARTSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMSSF47917. SSF47917. 1 hit.
SSF50615. SSF50615. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR01039. atpD. 1 hit.
PROSITEPS00152. ATPASE_ALPHA_BETA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameATPB_BUCAP
AccessionPrimary (citable) accession number: Q07232
Secondary accession number(s): O51872, Q93V14
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: December 15, 1998
Last modified: May 14, 2014
This is version 111 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Buchnera aphidicola (subsp. Schizaphis graminum)

Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names