ID TNR9_HUMAN Reviewed; 255 AA. AC Q07011; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 01-FEB-1995, sequence version 1. DT 27-MAR-2024, entry version 198. DE RecName: Full=Tumor necrosis factor receptor superfamily member 9; DE AltName: Full=4-1BB ligand receptor; DE AltName: Full=CDw137; DE AltName: Full=T-cell antigen 4-1BB homolog; DE AltName: Full=T-cell antigen ILA; DE AltName: CD_antigen=CD137; DE Flags: Precursor; GN Name=TNFRSF9; Synonyms=CD137, ILA; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC TISSUE=Blood; RX PubMed=8088337; DOI=10.1002/eji.1830240943; RA Alderson M.R., Smith C.A., Tough T.W., Davis-Smith T., Armitage R.J., RA Falk B., Roux E., Baker E., Sutherland G.R., Din W.S., Goodwin R.G.; RT "Molecular and biological characterization of human 4-1BB and its ligand."; RL Eur. J. Immunol. 24:2219-2227(1994). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA]. RC TISSUE=Blood; RX PubMed=8262389; DOI=10.1016/0378-1119(93)90110-o; RA Schwarz H., Tuckwell J., Lotz M.; RT "A receptor induced by lymphocyte activation (ILA): a new member of the RT human nerve-growth-factor/tumor-necrosis-factor receptor family."; RL Gene 134:295-298(1993). RN [3] RP SEQUENCE REVISION TO 107. RA Schwarz H.; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [MRNA]. RC TISSUE=Blood; RX PubMed=7622190; DOI=10.1016/0165-2478(94)00227-i; RA Zhou Z., Kim S., Hurtado J., Lee Z.H., Kim K.K., Pollok K.E., Kwon B.S.; RT "Characterization of human homologue of 4-1BB and its ligand."; RL Immunol. Lett. 45:67-73(1995). RN [5] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS THR-56; ASN-115 AND RP ASP-176. RG NIEHS SNPs program; RL Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16710414; DOI=10.1038/nature04727; RA Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., RA Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., RA Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K., RA Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., RA Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., RA Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., RA Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., RA Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., RA Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., RA Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., RA Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., RA Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., RA Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., RA Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., RA Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., RA Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., RA Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., RA Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., RA Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., RA McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., RA Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., RA Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., RA Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., RA Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., RA Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., RA White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., RA Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., RA Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., RA Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.; RT "The DNA sequence and biological annotation of human chromosome 1."; RL Nature 441:315-321(2006). RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Kidney; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [8] RP PROTEIN SEQUENCE OF 24-38. RX PubMed=15340161; DOI=10.1110/ps.04682504; RA Zhang Z., Henzel W.J.; RT "Signal peptide prediction based on analysis of experimentally verified RT cleavage sites."; RL Protein Sci. 13:2819-2824(2004). RN [9] RP INTERACTION WITH TRAF1; TRAF2 AND TRAF3. RX PubMed=9418902; DOI=10.1128/mcb.18.1.558; RA Arch R.H., Thompson C.B.; RT "4-1BB and Ox40 are members of a tumor necrosis factor (TNF)-nerve growth RT factor receptor subfamily that bind TNF receptor-associated factors and RT activate nuclear factor kappaB."; RL Mol. Cell. Biol. 18:558-565(1998). RN [10] RP INTERACTION WITH TRAF1 AND TRAF2. RX PubMed=9607925; DOI=10.1084/jem.187.11.1849; RA Saoulli K., Lee S.Y., Cannons J.L., Yeh W.C., Santana A., Goldstein M.D., RA Bangia N., DeBenedette M.A., Mak T.W., Choi Y., Watts T.H.; RT "CD28-independent, TRAF2-dependent costimulation of resting T cells by 4- RT 1BB ligand."; RL J. Exp. Med. 187:1849-1862(1998). RN [11] RP INTERACTION WITH LRR-REPEAT PROTEIN 1/LRR-1. RX PubMed=11804328; RA Jang I.-K., Lee Z.-H., Kim H.-H., Hill J.M., Kim J.-D., Kwon B.S.; RT "A novel leucine-rich repeat protein (LRR-1): potential involvement in 4- RT 1BB-mediated signal transduction."; RL Mol. Cells 12:304-312(2001). RN [12] RP VARIANT [LARGE SCALE ANALYSIS] GLY-250. RX PubMed=16959974; DOI=10.1126/science.1133427; RA Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., RA Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., RA Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V., RA Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., RA Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., RA Velculescu V.E.; RT "The consensus coding sequences of human breast and colorectal cancers."; RL Science 314:268-274(2006). RN [13] RP INVOLVEMENT IN IMD109, VARIANT IMD109 SER-109, CHARACTERIZATION OF VARIANT RP IMD109 SER-109, FUNCTION, AND TISSUE SPECIFICITY. RX PubMed=30872117; DOI=10.1016/j.jaci.2019.03.002; RA Alosaimi M.F., Hoenig M., Jaber F., Platt C.D., Jones J., Wallace J., RA Debatin K.M., Schulz A., Jacobsen E., Moeller P., Shamseldin H.E., RA Abdulwahab F., Ibrahim N., Alardati H., Almuhizi F., Abosoudah I.F., RA Basha T.A., Chou J., Alkuraya F.S., Geha R.S.; RT "Immunodeficiency and EBV-induced lymphoproliferation caused by 4-1BB RT deficiency."; RL J. Allergy Clin. Immunol. 144:574-583(2019). CC -!- FUNCTION: Receptor for TNFSF9/4-1BBL. Conveys a signal that enhances CC CD8(+) T-cell survival, cytotoxicity, and mitochondrial activity, CC thereby promoting immunity against viruses and tumors (Probable). CC {ECO:0000305|PubMed:30872117}. CC -!- SUBUNIT: Predominantly homodimeric, but may also exist as a monomer (By CC similarity). Interacts with TRAF1, TRAF2 and TRAF3 (PubMed:9418902, CC PubMed:9607925). Interacts with LRR-repeat protein 1/LRR-1 CC (PubMed:11804328). {ECO:0000250|UniProtKB:P20334, CC ECO:0000269|PubMed:11804328, ECO:0000269|PubMed:9418902, CC ECO:0000269|PubMed:9607925}. CC -!- INTERACTION: CC Q07011; Q9Y6X1: SERP1; NbExp=3; IntAct=EBI-12945620, EBI-10329948; CC -!- SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane CC protein {ECO:0000305|PubMed:30872117}. CC -!- TISSUE SPECIFICITY: Expressed on the surface of activated T-cells. CC {ECO:0000269|PubMed:30872117}. CC -!- DISEASE: Immunodeficiency 109 with lymphoproliferation (IMD109) CC [MIM:620282]: An autosomal recessive primary immune disorder CC characterized by recurrent sinopulmonary infections, susceptibility to CC infection with Epstein-Barr virus (EBV), persistent EBV viremia, and CC EBV-induced lymphoproliferation or B-cell lymphoma. CC {ECO:0000269|PubMed:30872117}. Note=The disease may be caused by CC variants affecting the gene represented in this entry. CC -!- WEB RESOURCE: Name=NIEHS-SNPs; CC URL="http://egp.gs.washington.edu/data/tnfrsf9/"; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; U03397; AAA53133.1; -; mRNA. DR EMBL; L12964; AAA62478.2; -; mRNA. DR EMBL; AY438976; AAR05440.1; -; Genomic_DNA. DR EMBL; AL009183; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC006196; AAH06196.1; -; mRNA. DR CCDS; CCDS92.1; -. DR PIR; I38426; I38426. DR RefSeq; NP_001552.2; NM_001561.5. DR RefSeq; XP_011539688.1; XM_011541386.2. DR PDB; 6A3V; X-ray; 3.39 A; B/D/F/H/J/L/N/P/R/T/V/X=24-180. DR PDB; 6A3W; X-ray; 2.00 A; C/F/I/L=24-180. DR PDB; 6BWV; X-ray; 2.40 A; D/E=24-160. DR PDB; 6CPR; X-ray; 2.70 A; D/E/F=23-160. DR PDB; 6CU0; X-ray; 3.20 A; G/H/I/J/K/L=23-160. DR PDB; 6MGP; X-ray; 2.13 A; X/Y/Z=25-162. DR PDB; 6MHR; X-ray; 2.80 A; C/F=25-162. DR PDB; 6MI2; X-ray; 2.72 A; C/F=25-162. DR PDB; 6Y8K; X-ray; 2.01 A; AAA=24-160. DR PDB; 7D4B; X-ray; 3.14 A; A=25-162. DR PDB; 7YXU; X-ray; 2.31 A; A=24-160. DR PDB; 8GYE; X-ray; 2.30 A; A/D=24-186. DR PDBsum; 6A3V; -. DR PDBsum; 6A3W; -. DR PDBsum; 6BWV; -. DR PDBsum; 6CPR; -. DR PDBsum; 6CU0; -. DR PDBsum; 6MGP; -. DR PDBsum; 6MHR; -. DR PDBsum; 6MI2; -. DR PDBsum; 6Y8K; -. DR PDBsum; 7D4B; -. DR PDBsum; 7YXU; -. DR PDBsum; 8GYE; -. DR AlphaFoldDB; Q07011; -. DR SMR; Q07011; -. DR BioGRID; 109817; 36. DR DIP; DIP-3021N; -. DR ELM; Q07011; -. DR IntAct; Q07011; 5. DR STRING; 9606.ENSP00000478699; -. DR BindingDB; Q07011; -. DR ChEMBL; CHEMBL3712857; -. DR DrugBank; DB12077; Urelumab. DR GuidetoPHARMACOLOGY; 1878; -. DR TCDB; 9.B.87.4.2; the selenoprotein p receptor (selp-receptor) family. DR GlyCosmos; Q07011; 2 sites, No reported glycans. DR GlyGen; Q07011; 2 sites. DR iPTMnet; Q07011; -. DR PhosphoSitePlus; Q07011; -. DR BioMuta; TNFRSF9; -. DR DMDM; 728738; -. DR CPTAC; CPTAC-5974; -. DR MassIVE; Q07011; -. DR PaxDb; 9606-ENSP00000478699; -. DR PeptideAtlas; Q07011; -. DR ProteomicsDB; 58498; -. DR ABCD; Q07011; 3 sequenced antibodies. DR Antibodypedia; 3718; 1604 antibodies from 48 providers. DR CPTC; Q07011; 6 antibodies. DR DNASU; 3604; -. DR Ensembl; ENST00000377507.8; ENSP00000366729.3; ENSG00000049249.10. DR GeneID; 3604; -. DR KEGG; hsa:3604; -. DR MANE-Select; ENST00000377507.8; ENSP00000366729.3; NM_001561.6; NP_001552.2. DR UCSC; uc001aot.4; human. DR AGR; HGNC:11924; -. DR DisGeNET; 3604; -. DR GeneCards; TNFRSF9; -. DR HGNC; HGNC:11924; TNFRSF9. DR HPA; ENSG00000049249; Tissue enhanced (lymphoid). DR MalaCards; TNFRSF9; -. DR MIM; 602250; gene. DR MIM; 620282; phenotype. DR neXtProt; NX_Q07011; -. DR OpenTargets; ENSG00000049249; -. DR PharmGKB; PA36617; -. DR VEuPathDB; HostDB:ENSG00000049249; -. DR eggNOG; ENOG502S017; Eukaryota. DR GeneTree; ENSGT00730000111279; -. DR HOGENOM; CLU_076906_0_0_1; -. DR InParanoid; Q07011; -. DR OMA; YLFKQPF; -. DR OrthoDB; 5471029at2759; -. DR PhylomeDB; Q07011; -. DR TreeFam; TF336151; -. DR PathwayCommons; Q07011; -. DR Reactome; R-HSA-5669034; TNFs bind their physiological receptors. DR SignaLink; Q07011; -. DR BioGRID-ORCS; 3604; 16 hits in 1155 CRISPR screens. DR GeneWiki; CD137; -. DR GenomeRNAi; 3604; -. DR Pharos; Q07011; Tbio. DR PRO; PR:Q07011; -. DR Proteomes; UP000005640; Chromosome 1. DR RNAct; Q07011; Protein. DR Bgee; ENSG00000049249; Expressed in buccal mucosa cell and 110 other cell types or tissues. DR ExpressionAtlas; Q07011; baseline and differential. DR GO; GO:0009897; C:external side of plasma membrane; IEA:InterPro. DR GO; GO:0005886; C:plasma membrane; TAS:Reactome. DR GO; GO:0038023; F:signaling receptor activity; IBA:GO_Central. DR GO; GO:0006915; P:apoptotic process; TAS:ProtInc. DR GO; GO:0008285; P:negative regulation of cell population proliferation; TAS:ProtInc. DR GO; GO:0042127; P:regulation of cell population proliferation; IBA:GO_Central. DR GO; GO:0033084; P:regulation of immature T cell proliferation in thymus; IEA:Ensembl. DR CDD; cd13410; TNFRSF9; 1. DR Gene3D; 2.10.50.10; Tumor Necrosis Factor Receptor, subunit A, domain 2; 2. DR InterPro; IPR009030; Growth_fac_rcpt_cys_sf. DR InterPro; IPR001368; TNFR/NGFR_Cys_rich_reg. DR InterPro; IPR020413; TNFR_9. DR InterPro; IPR034020; TNFRSF9_N. DR PANTHER; PTHR47139; TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 9; 1. DR PANTHER; PTHR47139:SF1; TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 9; 1. DR Pfam; PF00020; TNFR_c6; 1. DR PRINTS; PR01924; TNFACTORR9. DR SMART; SM00208; TNFR; 2. DR SUPFAM; SSF57184; Growth factor receptor domain; 1. DR PROSITE; PS00652; TNFR_NGFR_1; 1. DR PROSITE; PS50050; TNFR_NGFR_2; 1. DR Genevisible; Q07011; HS. PE 1: Evidence at protein level; KW 3D-structure; Cell membrane; Direct protein sequencing; Disulfide bond; KW Glycoprotein; Membrane; Receptor; Reference proteome; Repeat; Signal; KW Transmembrane; Transmembrane helix. FT SIGNAL 1..23 FT /evidence="ECO:0000269|PubMed:15340161" FT CHAIN 24..255 FT /note="Tumor necrosis factor receptor superfamily member 9" FT /id="PRO_0000034577" FT TOPO_DOM 24..186 FT /note="Extracellular" FT /evidence="ECO:0000255" FT TRANSMEM 187..213 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 214..255 FT /note="Cytoplasmic" FT /evidence="ECO:0000255" FT REPEAT 24..45 FT /note="TNFR-Cys 1" FT REPEAT 47..86 FT /note="TNFR-Cys 2" FT REPEAT 87..118 FT /note="TNFR-Cys 3" FT REPEAT 119..159 FT /note="TNFR-Cys 4" FT REGION 161..180 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 214..255 FT /note="Interaction with LRR-1" FT CARBOHYD 138 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 149 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT DISULFID 28..37 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT DISULFID 31..45 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT DISULFID 48..62 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT DISULFID 65..78 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT DISULFID 68..86 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT DISULFID 88..94 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT DISULFID 99..106 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT DISULFID 102..117 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT DISULFID 121..133 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT DISULFID 139..158 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00206" FT VARIANT 56 FT /note="A -> T (in dbSNP:rs9657963)" FT /evidence="ECO:0000269|Ref.5" FT /id="VAR_018920" FT VARIANT 109 FT /note="G -> S (in IMD109; uncertain significance; contrary FT to wild-type, undetectable in patient's stimulated FT peripheral blood mononuclear cells; patient's cells show FT defective expansion, reduced expression of IFNG and FT perforin/PRF1 and impaired allospecific and EBV-specific FT cytotoxic activity, as well as reduced mitochondrial FT function)" FT /evidence="ECO:0000269|PubMed:30872117" FT /id="VAR_088225" FT VARIANT 115 FT /note="K -> N (in dbSNP:rs9657965)" FT /evidence="ECO:0000269|Ref.5" FT /id="VAR_018921" FT VARIANT 176 FT /note="A -> D (in dbSNP:rs9657979)" FT /evidence="ECO:0000269|Ref.5" FT /id="VAR_018922" FT VARIANT 250 FT /note="E -> G (in a colorectal cancer sample; somatic FT mutation; dbSNP:rs776878260)" FT /evidence="ECO:0000269|PubMed:16959974" FT /id="VAR_035478" FT HELIX 27..30 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 35..37 FT /evidence="ECO:0007829|PDB:6A3W" FT TURN 39..42 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 45..47 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 55..57 FT /evidence="ECO:0007829|PDB:6BWV" FT STRAND 60..64 FT /evidence="ECO:0007829|PDB:6MGP" FT STRAND 72..76 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 80..82 FT /evidence="ECO:0007829|PDB:6MGP" FT STRAND 85..88 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 92..96 FT /evidence="ECO:0007829|PDB:6A3W" FT HELIX 97..99 FT /evidence="ECO:0007829|PDB:6MGP" FT STRAND 101..104 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 110..113 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 116..119 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 128..131 FT /evidence="ECO:0007829|PDB:6A3W" FT HELIX 139..142 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 145..148 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 152..154 FT /evidence="ECO:0007829|PDB:6A3W" FT STRAND 157..159 FT /evidence="ECO:0007829|PDB:6A3W" SQ SEQUENCE 255 AA; 27899 MW; F3A563FE5EF00460 CRC64; MGNSCYNIVA TLLLVLNFER TRSLQDPCSN CPAGTFCDNN RNQICSPCPP NSFSSAGGQR TCDICRQCKG VFRTRKECSS TSNAECDCTP GFHCLGAGCS MCEQDCKQGQ ELTKKGCKDC CFGTFNDQKR GICRPWTNCS LDGKSVLVNG TKERDVVCGP SPADLSPGAS SVTPPAPARE PGHSPQIISF FLALTSTALL FLLFFLTLRF SVVKRGRKKL LYIFKQPFMR PVQTTQEEDG CSCRFPEEEE GGCEL //