Q06787 (FMR1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 131.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Fragile X mental retardation protein 1 Short name=FMRP Short name=Protein FMR-1 | ||
| Gene names |
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| Organism | Homo sapiens (Human) | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 632 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Translation repressor. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates translation repression By similarity. RNA-binding protein that plays a role in intracellular RNA transport and in the regulation of translation of target mRNAs. Associated with polysomes. May play a role in the transport of mRNA from the nucleus to the cytoplasm. Binds strongly to poly(G), binds moderately to poly(U) but shows very little binding to poly(A) or poly(C). |
| Subunit structure | Component of the CYFIP1-EIF4E-FMR1 complex which is composed of CYFIP, EIF4E and FMR1. Interacts with CYFIP1 and CYFIP2. The interaction with brain cytoplasmic RNA 1 (BC1) increases binding affinity for the CYFIP1-EIF4E complex in the brain By similarity. Homooligomer. Found in a RNP granule complex with IGF2BP1. Directly interacts with SMN and TDRD3. Interacts with the SMN core complex that contains SMN1, GEMIN2/SIP1, DDX20/GEMIN3, GEMIN4, GEMIN5, GEMIN6, GEMIN7, GEMIN8 and STRAP/UNRIP. Interacts with FXR1, FXR2, IGF2BP1, NUFIP1, NUFIP2, MCRS1 and RANBP9. Ref.17 Ref.19 Ref.20 Ref.21 Ref.23 Ref.24 Ref.25 Ref.27 Ref.35 |
| Subcellular location | Cytoplasm. Nucleus › nucleolus Ref.12 Ref.13 Ref.15 Ref.19 Ref.23 Ref.27. |
| Tissue specificity | Highest levels found in neurons, brain, testis, placenta and lymphocytes. Also expressed in epithelial tissues and at very low levels in glial cells. Ref.2 Ref.13 |
| Post-translational modification | Phosphorylated on several serine residues By similarity. Ref.18 |
| Involvement in disease | Defects in FMR1 are the cause of fragile X syndrome (FRAX) [MIM:300624]. Fragile X syndrome is a common genetic disease (has a prevalence of one in every 2000 children) which is characterized by moderate to severe mental retardation, macroorchidism (enlargement of the testicles), large ears, prominent jaw, and high-pitched, jocular speech. The defect in most fragile X syndrome patients results from an amplification of a CGG repeat region which is directly in front of the coding region. Ref.11 Ref.13 Ref.28 Ref.29 Ref.30 Ref.32 Ref.34 Ref.35 Defects in FMR1 are the cause of fragile X tremor/ataxia syndrome (FXTAS) [MIM:300623]. In FXTAS, the expanded repeats range in size from 55 to 200 repeats and are referred to as 'premutations'. Full repeat expansions with greater than 200 repeats results in fragile X mental retardation syndrome [MIM:300624]. Carriers of the premutation typically do not show the full fragile X syndrome phenotype, but comprise a subgroup that may have some physical features of fragile X syndrome or mild cognitive and emotional problems. Ref.33 Defects in FMR1 are the cause of premature ovarian failure syndrome type 1 (POF1) [MIM:311360]. An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol. Ref.16 |
| Miscellaneous | RNA-binding activity is inhibited by RANBP9. The mechanism of the severe phenotype in the Asn-304 patient lies in the sequestration of bound mRNAs in nontranslatable mRNP particles. In the absence of FMRP, these same mRNAs may be partially translated via alternate mRNPs, although perhaps abnormally localized or regulated, resulting in typical fragile X syndrome. Asn-304 mutation maps to a position within the second KH domain of FMRP that is critical for stabilizing sequence-specific RNA-protein interactions. Asn-304 mutation abrogates the association of the FMRP KH 2 domain with its target, kissing complex RNA. |
| Sequence similarities | Belongs to the FMR1 family. Contains 2 KH domains. |
| Sequence caution | The sequence AAA52458.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence AAA62466.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence AAA62467.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| CYFIP1 | Q7L576 | 4 | EBI-366305,EBI-1048143 | |
| CYFIP2 | Q96F07 | 2 | EBI-366305,EBI-2433893 |
Alternative products
| This entry describes 8 isoforms produced by alternative splicing. [Align] [Select] Note: At least 12 different isoforms are produced. | ||||||
| Isoform 6 (identifier: Q06787-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 1 (identifier: Q06787-2) The sequence of this isoform differs from the canonical sequence as follows: 376-396: Missing. 580-596: Missing. | ||||||
| Isoform 2 (identifier: Q06787-3) The sequence of this isoform differs from the canonical sequence as follows: 491-502: Missing. | ||||||
| Isoform 3 (identifier: Q06787-4) The sequence of this isoform differs from the canonical sequence as follows: 491-502: Missing. 580-596: Missing. | ||||||
| Isoform 4 (identifier: Q06787-5) The sequence of this isoform differs from the canonical sequence as follows: 491-515: Missing. | ||||||
| Isoform 5 (identifier: Q06787-6) The sequence of this isoform differs from the canonical sequence as follows: 491-515: Missing. 580-596: Missing. | ||||||
| Isoform 7 (identifier: Q06787-7) The sequence of this isoform differs from the canonical sequence as follows: 580-596: Missing. | ||||||
| Isoform 8 (identifier: Q06787-8) The sequence of this isoform differs from the canonical sequence as follows: 376-396: Missing. 491-515: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 632 | 632 | Fragile X mental retardation protein 1 | PRO_0000050102 | |||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||
| Domain | 222 – 251 | 30 | KH 1 | ||||||||||||||||||||||||||||||
| Domain | 285 – 314 | 30 | KH 2 | ||||||||||||||||||||||||||||||
| Region | 419 – 632 | 214 | Interaction with RANBP9 | ||||||||||||||||||||||||||||||
| Region | 534 – 548 | 15 | RNA-binding RGG-box | ||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||
| Modified residue | 500 | 1 | Phosphoserine Ref.18 | ||||||||||||||||||||||||||||||
| Modified residue | 544 | 1 | Omega-N-methylated arginine Ref.22 | ||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||
| Alternative sequence | 376 – 396 | 21 | Missing in isoform 1 and isoform 8. | VSP_002823 | |||||||||||||||||||||||||||||
| Alternative sequence | 491 – 515 | 25 | Missing in isoform 4, isoform 5 and isoform 8. | VSP_002825 | |||||||||||||||||||||||||||||
| Alternative sequence | 491 – 502 | 12 | Missing in isoform 2 and isoform 3. | VSP_002824 | |||||||||||||||||||||||||||||
| Alternative sequence | 580 – 596 | 17 | Missing in isoform 1, isoform 3, isoform 5 and isoform 7. | VSP_002826 | |||||||||||||||||||||||||||||
| Natural variant | 138 | 1 | R → Q Rare variant found in a developmentally delayed male; unknown pathological significance. Ref.36 | VAR_064507 | |||||||||||||||||||||||||||||
| Natural variant | 145 | 1 | A → S. Corresponds to variant rs29281 [ dbSNP | Ensembl ]. | VAR_029278 | |||||||||||||||||||||||||||||
| Natural variant | 304 | 1 | I → N in FRAX; alters protein folding and stability; the protein is able to bind RNA, but has reduced affinity for RNA at high salt concentrations. Ref.28 Ref.29 Ref.30 Ref.32 Ref.34 Ref.35 | VAR_005234 | |||||||||||||||||||||||||||||
| Natural variant | 546 | 1 | R → H. Ref.31 | VAR_005235 | |||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||
| Mutagenesis | 125 – 126 | 2 | TF → AA: Alters the structural integrity of the N-terminus and leads to aggregation. Ref.27 | ||||||||||||||||||||||||||||||
| Mutagenesis | 500 | 1 | S → A: Loss of phosphorylation. Ref.18 Ref.27 | ||||||||||||||||||||||||||||||
| Mutagenesis | 544 | 1 | R → K: Reduces arginine methylation by 80%. Ref.22 Ref.27 | ||||||||||||||||||||||||||||||
| Mutagenesis | 546 | 1 | R → K: Slightly reduced methylation. Ref.22 Ref.27 | ||||||||||||||||||||||||||||||
| Sequence conflict | 294 – 295 | 2 | Missing in AAA52458. Ref.1 | ||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||
| Beta strand | 220 – 224 | 5 | |||||||||||||||||||||||||||||||
| Helix | 227 – 229 | 3 | |||||||||||||||||||||||||||||||
| Helix | 230 – 234 | 5 | |||||||||||||||||||||||||||||||
| Helix | 236 – 238 | 3 | |||||||||||||||||||||||||||||||
| Helix | 239 – 245 | 7 | |||||||||||||||||||||||||||||||
| Beta strand | 250 – 256 | 7 | |||||||||||||||||||||||||||||||
| Turn | 257 – 260 | 4 | |||||||||||||||||||||||||||||||
| Beta strand | 261 – 268 | 8 | |||||||||||||||||||||||||||||||
| Helix | 269 – 279 | 11 | |||||||||||||||||||||||||||||||
| Beta strand | 281 – 289 | 9 | |||||||||||||||||||||||||||||||
| Helix | 290 – 292 | 3 | |||||||||||||||||||||||||||||||
| Helix | 293 – 297 | 5 | |||||||||||||||||||||||||||||||
| Helix | 299 – 301 | 3 | |||||||||||||||||||||||||||||||
| Helix | 302 – 311 | 10 | |||||||||||||||||||||||||||||||
| Beta strand | 314 – 318 | 5 | |||||||||||||||||||||||||||||||
| Beta strand | 332 – 334 | 3 | |||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome." Verkerk A.J.M.H., Pieretti M., Sutcliffe J.S., Fu Y.H., Kuhl D.P., Pizzuti A., Reiner O., Richards S., Victoria M.F., Zhang F., Eussen B.E., van Ommen G.-J.B., Blonden L.A.J., Riggins G.J., Chastain J.L., Kunst C.B., Galjaard H., Caskey C.T. Warren S.T.Cell 65:905-914(1991) [PubMed: 1710175] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], ALTERNATIVE SPLICING. Tissue: Fetal brain. |
| [2] | "Alternative splicing in the fragile X gene FMR1." Verkerk A.J.M.H., de Graaff E., de Boulle K., Eichler E.E., Konecki D.S., Reyniers E., Manca A., Poustka A., Willems P.J., Nelson D.L., Oostra B.A. Hum. Mol. Genet. 2:399-404(1993) [PubMed: 8504300] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 6), TISSUE SPECIFICITY. Tissue: Fetal brain and Liver. |
| [3] | Erratum Verkerk A.J.H.M., de Graaff E., de Boulle K., Eichler E.E., Konecki D.S., Reyniers E., Manca A., Poustka A., Willems P.J., Nelson D.L., Oostra B.A. Hum. Mol. Genet. 2:1348-1348(1993) [PubMed: 8401531] [Abstract] |
| [4] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed: 15772651] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 8). Tissue: Placenta. |
| [7] | "Fine structure of the human FMR1 gene." Eichler E.E., Richards S., Gibbs R.A., Nelson D.L. Hum. Mol. Genet. 2:1147-1153(1993) [PubMed: 8401496] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-34; 36-139; 141-293; 295-490 AND 492-632. |
| [8] | Erratum Eichler E.E., Richards S., Gibbs R.A., Nelson D.L. Hum. Mol. Genet. 3:684-685(1994) [PubMed: 8069329] [Abstract] |
| [9] | Eichler E.E., Richards S., Gibbs R.A., Nelson D.L. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: SEQUENCE REVISION TO 18-34. |
| [10] | "Two new cases of FMR1 deletion associated with mental impairment." Hirst M., Grewal P., Flannery A., Slatter R., Maher E., Barton D., Fryns J.-P., Davies K. Am. J. Hum. Genet. 56:67-74(1995) [PubMed: 7825604] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-17. |
| [11] | "The protein product of the fragile X gene, FMR1, has characteristics of an RNA-binding protein." Siomi H., Siomi M.C., Nussbaum R.L., Dreyfuss G. Cell 74:291-298(1993) [PubMed: 7688265] [Abstract] Cited for: RNA-BINDING, INVOLVEMENT IN FRAX. |
| [12] | "Characterization and localization of the FMR-1 gene product associated with fragile X syndrome." Verheij C., Bakker C.E., de Graaff E., Keulemans J., Willemsen R., Verkerk A.J.M.H., Galjaard H., Reuser A.J.J., Hoogeveen A.T., Oostra B.A. Nature 363:722-724(1993) [PubMed: 8515814] [Abstract] Cited for: SUBCELLULAR LOCATION. |
| [13] | "The FMR-1 protein is cytoplasmic, most abundant in neurons and appears normal in carriers of a fragile X premutation." Devys D., Lutz Y., Rouyer N., Bellocq J.-P., Mandel J.-L. Nat. Genet. 4:335-340(1993) [PubMed: 8401578] [Abstract] Cited for: SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INVOLVEMENT IN FRAX. |
| [14] | "FMR1 protein: conserved RNP family domains and selective RNA binding." Ashley C.T. Jr., Wilkinson K.D., Reines D., Warren S.T. Science 262:563-566(1993) [PubMed: 7692601] [Abstract] Cited for: RNA-BINDING. |
| [15] | "FXR1, an autosomal homolog of the fragile X mental retardation gene." Siomi M.C., Siomi H., Sauer W.H., Srinivasan S., Nussbaum R.L., Dreyfuss G. EMBO J. 14:2401-2408(1995) [PubMed: 7781595] [Abstract] Cited for: RNA-BINDING, SUBCELLULAR LOCATION. |
| [16] | "Studies of FRAXA and FRAXE in women with premature ovarian failure." Murray A., Webb J., Grimley S., Conway G., Jacobs P. J. Med. Genet. 35:637-640(1998) [PubMed: 9719368] [Abstract] Cited for: INVOLVEMENT IN POF1. |
| [17] | "A novel RNA-binding nuclear protein that interacts with the fragile X mental retardation (FMR1) protein." Bardoni B., Schenck A., Mandel J.-L. Hum. Mol. Genet. 8:2557-2566(1999) [PubMed: 10556305] [Abstract] Cited for: INTERACTION WITH NUFIP1. |
| [18] | "Casein kinase II phosphorylates the fragile X mental retardation protein and modulates its biological properties." Siomi M.C., Higashijima K., Ishizuka A., Siomi H. Mol. Cell. Biol. 22:8438-8447(2002) [PubMed: 12446764] [Abstract] Cited for: PHOSPHORYLATION AT SER-500, MUTAGENESIS OF SER-500. |
| [19] | "82-FIP, a novel FMRP (fragile X mental retardation protein) interacting protein, shows a cell cycle-dependent intracellular localization." Bardoni B., Castets M., Huot M.-E., Schenck A., Adinolfi S., Corbin F., Pastore A., Khandjian E.W., Mandel J.-L. Hum. Mol. Genet. 12:1689-1698(2003) [PubMed: 12837692] [Abstract] Cited for: INTERACTION WITH NUFIP2, SUBCELLULAR LOCATION. |
| [20] | "Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs." Rackham O., Brown C.M. EMBO J. 23:3346-3355(2004) [PubMed: 15282548] [Abstract] Cited for: IDENTIFICATION IN A RNP GRANULE COMPLEX WITH IGF2BP1, INTERACTION WITH IGF2BP1. |
| [21] | "The C-terminus of fragile X mental retardation protein interacts with the multi-domain Ran-binding protein in the microtubule-organising centre." Menon R.P., Gibson T.J., Pastore A. J. Mol. Biol. 343:43-53(2004) [PubMed: 15381419] [Abstract] Cited for: INTERACTION WITH RANBP9. |
| [22] | "Alternative splicing modulates protein arginine methyltransferase-dependent methylation of fragile X syndrome mental retardation protein." Dolzhanskaya N., Merz G., Denman R.B. Biochemistry 45:10385-10393(2006) [PubMed: 16922515] [Abstract] Cited for: METHYLATION AT ARG-544, MUTAGENESIS OF ARG-544 AND ARG-546. |
| [23] | "The nuclear microspherule protein 58 is a novel RNA-binding protein that interacts with fragile X mental retardation protein in polyribosomal mRNPs from neurons." Davidovic L., Bechara E., Gravel M., Jaglin X.H., Tremblay S., Sik A., Bardoni B., Khandjian E.W. Hum. Mol. Genet. 15:1525-1538(2006) [PubMed: 16571602] [Abstract] Cited for: INTERACTION WITH MCRS1, SUBCELLULAR LOCATION. |
| [24] | "TDRD3, a novel Tudor domain-containing protein, localizes to cytoplasmic stress granules." Goulet I., Boisvenue S., Mokas S., Mazroui R., Cote J. Hum. Mol. Genet. 17:3055-3074(2008) [PubMed: 18632687] [Abstract] Cited for: INTERACTION WITH TDRD3. |
| [25] | "In vitro and in cellulo evidences for association of the survival of motor neuron complex with the fragile X mental retardation protein." Piazzon N., Rage F., Schlotter F., Moine H., Branlant C., Massenet S. J. Biol. Chem. 283:5598-5610(2008) [PubMed: 18093976] [Abstract] Cited for: INTERACTION WITH SMN AND THE SMN CORE COMPLEX. |
| [26] | "The solution structure of the first KH domain of FMR1, the protein responsible for the fragile X syndrome." Musco G., Kharrat A., Stier G., Fraternali F., Gibson T.J., Nilges M., Pastore A. Nat. Struct. Biol. 4:712-716(1997) [PubMed: 9302998] [Abstract] Cited for: STRUCTURE BY NMR OF 216-280. |
| [27] | "The structure of the N-terminal domain of the fragile X mental retardation protein: a platform for protein-protein interaction." Ramos A., Hollingworth D., Adinolfi S., Castets M., Kelly G., Frenkiel T.A., Bardoni B., Pastore A. Structure 14:21-31(2006) [PubMed: 16407062] [Abstract] Cited for: STRUCTURE BY NMR OF 1-134, MUTAGENESIS OF 125-THR-PHE-126, SUBCELLULAR LOCATION, INTERACTION WITH NUFIP2. |
| [28] | "Fragile X mental retardation syndrome: structure of the KH1-KH2 domains of fragile X mental retardation protein." Valverde R., Pozdnyakova I., Kajander T., Venkatraman J., Regan L. Structure 15:1090-1098(2007) [PubMed: 17850748] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS) OF 397-425, CHARACTERIZATION OF VARIANT FRAX ASN-304. |
| [29] | "A point mutation in the FMR-1 gene associated with fragile X mental retardation." de Boulle K., Verkerk A.J.M.H., Reyniers E., Vits L., Hendrickx J., van Roy B., van den Bos F., de Graaff E., Oostra B.A., Willems P.J. Nat. Genet. 3:31-35(1993) [PubMed: 8490650] [Abstract] Cited for: VARIANT FRAX ASN-304. |
| [30] | "Characterization of FMR1 proteins isolated from different tissues." Verheij C., de Graaff E., Bakker C.E., Willemsen R., Willems P.J., Meijer N., Galjaard H., Reuser A.J.J., Oostra B.A., Hoogeveen A.T. Hum. Mol. Genet. 4:895-901(1995) [PubMed: 7633450] [Abstract] Cited for: CHARACTERIZATION OF FRAX ASN-304. |
| [31] | "Novel point mutation within intron 10 of FMR-1 gene causing fragile X syndrome." Wang Y.-C., Lin M.-L., Lin S.J., Li Y.-C., Li S.-Y. Hum. Mutat. 10:393-399(1997) [PubMed: 9375856] [Abstract] Cited for: VARIANT HIS-546. |
| [32] | "FMRP associates with polyribosomes as an mRNP, and the I304N mutation of severe fragile X syndrome abolishes this association." Feng Y., Absher D., Eberhart D.E., Brown V., Malter H.E., Warren S.T. Mol. Cell 1:109-118(1997) [PubMed: 9659908] [Abstract] Cited for: CHARACTERIZATION OF VARIANT FRAX ASN-304. |
| [33] | "Intention tremor, parkinsonism, and generalized brain atrophy in male carriers of fragile X." Hagerman R.J., Leehey M., Heinrichs W., Tassone F., Wilson R., Hills J., Grigsby J., Gage B., Hagerman P.J. Neurology 57:127-130(2001) [PubMed: 11445641] [Abstract] Cited for: INVOLVEMENT IN FXTAS. |
| [34] | "Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes." Darnell J.C., Fraser C.E., Mostovetsky O., Stefani G., Jones T.A., Eddy S.R., Darnell R.B. Genes Dev. 19:903-918(2005) [PubMed: 15805463] [Abstract] Cited for: CHARACTERIZATION OF VARIANT FRAX ASN-304. |
| [35] | "Tdrd3 is a novel stress granule-associated protein interacting with the Fragile-X syndrome protein FMRP." Linder B., Ploettner O., Kroiss M., Hartmann E., Laggerbauer B., Meister G., Keidel E., Fischer U. Hum. Mol. Genet. 17:3236-3246(2008) [PubMed: 18664458] [Abstract] Cited for: CHARACTERIZATION OF VARIANT FRAX ASN-304, SUBUNIT, INTERACTION WITH TDRD3. |
| [36] | "Identification of novel FMR1 variants by massively parallel sequencing in developmentally delayed males." Collins S.C., Bray S.M., Suhl J.A., Cutler D.J., Coffee B., Zwick M.E., Warren S.T. Am. J. Med. Genet. A 152:2512-2520(2010) [PubMed: 20799337] [Abstract] Cited for: VARIANT GLN-138. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | L29074 Genomic DNA. Translation: AAB18828.1. L29074 Genomic DNA. Translation: AAB18829.1. L29074 Genomic DNA. Translation: AAB18830.1. CH471171 Genomic DNA. Translation: EAW61294.1. CH471171 Genomic DNA. Translation: EAW61296.1. CH471171 Genomic DNA. Translation: EAW61298.1. CH471171 Genomic DNA. Translation: EAW61301.1. CH471171 Genomic DNA. Translation: EAW61302.1. CH471171 Genomic DNA. Translation: EAW61303.1. BC086957 mRNA. Translation: AAH86957.1. L29074 Genomic DNA. Translation: AAB18831.1. L29074 Genomic DNA. Translation: AAB18832.1. L29074 Genomic DNA. Translation: AAB18833.1. M67468 mRNA. Translation: AAA52458.1. Different initiation. X69962 mRNA. Translation: CAA49586.1. S65791 mRNA. Translation: AAB28395.2. L19476 Genomic DNA. Translation: AAA62452.2. L19477 Genomic DNA. Translation: AAA62453.1. L19478 Genomic DNA. Translation: AAA62454.1. L19479 Genomic DNA. Translation: AAA62455.1. L19480 Genomic DNA. Translation: AAA62456.1. L19481 Genomic DNA. Translation: AAA62457.1. L19482 Genomic DNA. Translation: AAA62458.1. L19483 Genomic DNA. Translation: AAA62459.1. L19484 Genomic DNA. Translation: AAA62460.1. L19485 Genomic DNA. Translation: AAA62461.1. L19486 Genomic DNA. Translation: AAA62462.1. L19487 Genomic DNA. Translation: AAA62463.1. L19488 Genomic DNA. Translation: AAA62464.1. L19489 Genomic DNA. Translation: AAA62465.1. L19490 Genomic DNA. Translation: AAA62466.1. Sequence problems. L19491 Genomic DNA. Translation: AAA62467.1. Sequence problems. L19492 Genomic DNA. Translation: AAA62468.1. L19493 Genomic DNA. Translation: AAA62469.1. S76590 Genomic DNA. Translation: AAD14228.1. | ||||||||||||||||||||||||||||||
| IPI | IPI00215720. IPI00215721. IPI00215723. IPI00215724. IPI00215725. IPI00412343. IPI00645666. IPI00783298. | ||||||||||||||||||||||||||||||
| PIR | I68614. A40724. S45243. | ||||||||||||||||||||||||||||||
| RefSeq | NP_001172004.1. NM_001185075.1. NP_001172005.1. NM_001185076.1. NP_001172010.1. NM_001185081.1. NP_001172011.1. NM_001185082.1. NP_002015.1. NM_002024.5. | ||||||||||||||||||||||||||||||
| UniGene | Hs.103183. | ||||||||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||||||||||||||
| ProteinModelPortal | Q06787. | ||||||||||||||||||||||||||||||
| SMR | Q06787. Positions 1-134, 216-425. | ||||||||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||||||||
| DIP | DIP-29022N. DIP-29509N. | ||||||||||||||||||||||||||||||
| IntAct | Q06787. 9 interactions. | ||||||||||||||||||||||||||||||
| MINT | MINT-108156. | ||||||||||||||||||||||||||||||
| STRING | Q06787. | ||||||||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||||||||
| PhosphoSite | Q06787. | ||||||||||||||||||||||||||||||
Polymorphism databases | |||||||||||||||||||||||||||||||
| DMDM | 544328. | ||||||||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||||||||
| PRIDE | Q06787. | ||||||||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||||||||
| Ensembl | ENST00000370475; ENSP00000359506; ENSG00000102081. | ||||||||||||||||||||||||||||||
| GeneID | 2332. | ||||||||||||||||||||||||||||||
| KEGG | hsa:2332. | ||||||||||||||||||||||||||||||
| UCSC | uc004fck.2. human. uc010nst.1. human. | ||||||||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||||||||
| CTD | 2332. | ||||||||||||||||||||||||||||||
| GeneCards | GC0XP146993. | ||||||||||||||||||||||||||||||
| H-InvDB | HIX0028374. | ||||||||||||||||||||||||||||||
| HGNC | HGNC:3775. FMR1. | ||||||||||||||||||||||||||||||
| HPA | CAB012444. | ||||||||||||||||||||||||||||||
| MIM | 300623. phenotype. 300624. phenotype. 309550. gene. 311360. phenotype. | ||||||||||||||||||||||||||||||
| neXtProt | NX_Q06787. | ||||||||||||||||||||||||||||||
| Orphanet | 908. Fragile X syndrome. 93256. Fragile X-associated tremor/ataxia syndrome. 619. Primary ovarian failure. 261483. Xq27.3-q28 microduplication syndrome. | ||||||||||||||||||||||||||||||
| PharmGKB | PA28191. | ||||||||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||||||||
| eggNOG | prNOG08842. | ||||||||||||||||||||||||||||||
| HOGENOM | HBG717761. | ||||||||||||||||||||||||||||||
| HOVERGEN | HBG005739. | ||||||||||||||||||||||||||||||
| InParanoid | Q06787. | ||||||||||||||||||||||||||||||
| OMA | TFHKIKL. | ||||||||||||||||||||||||||||||
| PhylomeDB | Q06787. | ||||||||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||||||||
| ArrayExpress | Q06787. | ||||||||||||||||||||||||||||||
| Bgee | Q06787. | ||||||||||||||||||||||||||||||
| CleanEx | HS_FMR1. | ||||||||||||||||||||||||||||||
| Genevestigator | Q06787. | ||||||||||||||||||||||||||||||
| GermOnline | ENSG00000102081. Homo sapiens. | ||||||||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||||||||
| InterPro | IPR008395. Agenet. IPR022034. Frag_X_MRP_fam. IPR004087. KH. IPR004088. KH_type_1. IPR018111. KH_type_1_subgr. [Graphical view] | ||||||||||||||||||||||||||||||
| KO | K15516. | ||||||||||||||||||||||||||||||
| Pfam | PF05641. Agenet. 1 hit. PF12235. FXR1P_C. 1 hit. PF00013. KH_1. 2 hits. [Graphical view] | ||||||||||||||||||||||||||||||
| SMART | SM00322. KH. 2 hits. [Graphical view] | ||||||||||||||||||||||||||||||
| PROSITE | PS50084. KH_TYPE_1. 2 hits. [Graphical view] | ||||||||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||||||||
Other | |||||||||||||||||||||||||||||||
| NextBio | 9465. | ||||||||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||||||||
Entry information
| Entry name | FMR1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q06787 Secondary accession number(s): A6NNH4 Q99054 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with