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Q06562

- XYN1_COCCA

UniProt

Q06562 - XYN1_COCCA

Protein

Endo-1,4-beta-xylanase I

Gene

XYL1

Organism
Cochliobolus carbonum (Bipolaris zeicola)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (01 Feb 1995)
      Previous versions | rss
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    • Comment

    Functioni

    Major xylan-degrading enzyme. Contributes to the hydrolysis of arabinoxylan, the major component of maize cell-walls.

    Catalytic activityi

    Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei115 – 1151NucleophilePROSITE-ProRule annotation
    Active sitei206 – 2061Proton donorPROSITE-ProRule annotation

    GO - Molecular functioni

    1. endo-1,4-beta-xylanase activity Source: UniProtKB-EC

    GO - Biological processi

    1. xylan catabolic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolism, Polysaccharide degradation, Xylan degradation

    Enzyme and pathway databases

    BRENDAi3.2.1.8. 1551.
    UniPathwayiUPA00114.

    Protein family/group databases

    CAZyiGH11. Glycoside Hydrolase Family 11.
    mycoCLAPiXYN11A_COCCA.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Endo-1,4-beta-xylanase I (EC:3.2.1.8)
    Short name:
    Xylanase I
    Alternative name(s):
    1,4-beta-D-xylan xylanohydrolase 1
    Gene namesi
    Name:XYL1
    OrganismiCochliobolus carbonum (Bipolaris zeicola)
    Taxonomic identifieri5017 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaDothideomycetesPleosporomycetidaePleosporalesPleosporineaePleosporaceaeBipolaris

    Subcellular locationi

    GO - Cellular componenti

    1. extracellular region Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3030Sequence AnalysisAdd
    BLAST
    Chaini31 – 221191Endo-1,4-beta-xylanase IPRO_0000008003Add
    BLAST

    Post-translational modificationi

    The N-terminus is blocked.

    Structurei

    3D structure databases

    ProteinModelPortaliQ06562.
    SMRiQ06562. Positions 31-218.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Signal

    Family and domain databases

    Gene3Di2.60.120.180. 1 hit.
    InterProiIPR008985. ConA-like_lec_gl_sf.
    IPR001137. Glyco_hydro_11.
    IPR013319. Glyco_hydro_11/12.
    IPR018208. Glyco_hydro_11_AS.
    [Graphical view]
    PfamiPF00457. Glyco_hydro_11. 1 hit.
    [Graphical view]
    PRINTSiPR00911. GLHYDRLASE11.
    SUPFAMiSSF49899. SSF49899. 1 hit.
    PROSITEiPS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
    PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q06562-1 [UniParc]FASTAAdd to Basket

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    MVSFTSIITA AVAATGALAA PATDVSLVAR QNTPNGEGTH NGCFWSWWSD    50
    GGARATYTNG AGGSYSVSWG SGGNLVGGKG WNPGTARTIT YSGTYNYNGN 100
    SYLAVYGWTR NPLVEYYVVE NFGTYDPSSQ SQNKGTVTSD GSSYKIAQST 150
    RTNQPSIDGT RTFQQYWSVR QNKRSSGSVN MKTHFDAWAS KGMNLGQHYY 200
    QIVATEGYFS TGNAQITVNC P 221
    Length:221
    Mass (Da):23,728
    Last modified:February 1, 1995 - v1
    Checksum:i59DBD8983FC5B08C
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti81 – 811W → I AA sequence 1 PublicationCurated
    Sequence conflicti107 – 1071G → A AA sequence 1 PublicationCurated
    Sequence conflicti131 – 1311S → W AA sequence 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L13596 Genomic DNA. Translation: AAA33024.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L13596 Genomic DNA. Translation: AAA33024.1 .

    3D structure databases

    ProteinModelPortali Q06562.
    SMRi Q06562. Positions 31-218.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GH11. Glycoside Hydrolase Family 11.
    mycoCLAPi XYN11A_COCCA.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Enzyme and pathway databases

    UniPathwayi UPA00114 .
    BRENDAi 3.2.1.8. 1551.

    Family and domain databases

    Gene3Di 2.60.120.180. 1 hit.
    InterProi IPR008985. ConA-like_lec_gl_sf.
    IPR001137. Glyco_hydro_11.
    IPR013319. Glyco_hydro_11/12.
    IPR018208. Glyco_hydro_11_AS.
    [Graphical view ]
    Pfami PF00457. Glyco_hydro_11. 1 hit.
    [Graphical view ]
    PRINTSi PR00911. GLHYDRLASE11.
    SUPFAMi SSF49899. SSF49899. 1 hit.
    PROSITEi PS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
    PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Cloning and targeted gene disruption of XYL1, a beta 1,4-xylanase gene from the maize pathogen Cochliobolus carbonum."
      Apel P.C., Panaccione D.G., Holden F.R., Walton J.D.
      Mol. Plant Microbe Interact. 6:467-473(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: Race 1 / Isolate SB111.
    2. "Xylanases from the fungal maize pathogen Cochliobolus carbonum."
      Holden F.R., Walton J.D.
      Physiol. Mol. Plant Pathol. 40:39-47(1992)
      [AGRICOLA] [Europe PMC]
      Cited for: PARTIAL PROTEIN SEQUENCE.

    Entry informationi

    Entry nameiXYN1_COCCA
    AccessioniPrimary (citable) accession number: Q06562
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1995
    Last sequence update: February 1, 1995
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Direct protein sequencing

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3