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Protein

Probable glutathione S-transferase GSTU6

Gene

GSTU6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles.

Catalytic activityi

RX + glutathione = HX + R-S-glutathione.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei15 – 151GlutathioneBy similarity
Binding sitei42 – 421GlutathioneBy similarity
Binding sitei56 – 561Glutathione; via amide nitrogen and carbonyl oxygenBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Transferase

Keywords - Biological processi

Stress response

Names & Taxonomyi

Protein namesi
Recommended name:
Probable glutathione S-transferase GSTU6 (EC:2.5.1.18)
Alternative name(s):
28 kDa cold-induced protein
Gene namesi
Name:GSTU6
Ordered Locus Names:Os10g0530900, LOC_Os10g38740
ORF Names:OSJNBb0038A07.2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 10

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 236236Probable glutathione S-transferase GSTU6PRO_0000185870Add
BLAST

Proteomic databases

PaxDbiQ06398.

Expressioni

Tissue specificityi

Expressed in seedling shoots and roots.

Inductioni

By cold stress.

Gene expression databases

ExpressionAtlasiQ06398. baseline and differential.
GenevisibleiQ06398. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os10g38740.1.

Structurei

3D structure databases

ProteinModelPortaliQ06398.
SMRiQ06398. Positions 5-225.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 8480GST N-terminalAdd
BLAST
Domaini94 – 228135GST C-terminalAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni68 – 692Glutathione bindingBy similarity

Sequence similaritiesi

Belongs to the GST superfamily. Tau family.Curated
Contains 1 GST C-terminal domain.Curated
Contains 1 GST N-terminal domain.Curated

Phylogenomic databases

eggNOGiKOG0406. Eukaryota.
ENOG410XSIX. LUCA.
HOGENOMiHOG000125749.
InParanoidiQ06398.
OMAiFRCANEE.
OrthoDBiEOG09360N01.

Family and domain databases

Gene3Di1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProiIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF13417. GST_N_3. 1 hit.
[Graphical view]
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEiPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q06398-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGSGELKLL GVWSSPYAIR VRVVLNLKSL PYEYVEENLG DKSDLLLASN
60 70 80 90 100
PVHKSVPVLL HAGRPVNESQ VIVQYIDEVW PGGAGGRPSV MPSDPYERAV
110 120 130 140 150
ARFWAAYVDD KVRPAWLAIL FGSKTEEERA AAVAQAVAAL ETLEGAFGEC
160 170 180 190 200
SKGKPFFGGD GVGFVDVVLG GYLGWFTAID KLIGRRLIDP ARTPALAAWE
210 220 230
ERFRATDAAK GVVPDDADKL LEFRQTLLRW SASKAK
Length:236
Mass (Da):25,656
Last modified:January 4, 2005 - v2
Checksum:i60A5299744CB1F6C
GO

Sequence cautioni

The sequence BAA01632 differs from that shown. Reason: Frameshift at positions 66, 86, 100, 119 and 185. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti65 – 651Missing in BAA01632 (PubMed:16668981).Curated
Sequence conflicti83 – 886GAGGRP → RAGR in BAA01632 (PubMed:16668981).Curated
Sequence conflicti99 – 1035AVARF → VL in BAA01632 (PubMed:16668981).Curated
Sequence conflicti118 – 1181Missing in BAA01632 (PubMed:16668981).Curated
Sequence conflicti125 – 1251T → M in BAA01632 (PubMed:16668981).Curated
Sequence conflicti135 – 1439QAVAALETL → RRGGVETV in BAA01632 (PubMed:16668981).Curated
Sequence conflicti158 – 1625GGDGV → ARRR in BAA01632 (PubMed:16668981).Curated
Sequence conflicti168 – 1681V → VV in BAA01632 (PubMed:16668981).Curated
Sequence conflicti184 – 1841Missing in BAA01632 (PubMed:16668981).Curated
Sequence conflicti194 – 1952PA → SS in BAA01632 (PubMed:16668981).Curated
Sequence conflicti203 – 21614FRATD…VVPDD → STHRLQCVDVPMT in BAA01632 (PubMed:16668981).CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10861 mRNA. Translation: BAA01632.1. Frameshift.
AF309376 mRNA. Translation: AAG32469.1.
AC113948 Genomic DNA. Translation: AAM94535.1.
DP000086 Genomic DNA. Translation: AAP54769.1.
AP008216 Genomic DNA. Translation: BAF27055.1.
AP014966 Genomic DNA. Translation: BAT11780.1.
AK059760 mRNA. Translation: BAG87108.1.
AK103699 mRNA. Translation: BAG96210.1.
RefSeqiXP_015614356.1. XM_015758870.1.
UniGeneiOs.4762.

Genome annotation databases

EnsemblPlantsiOS10T0530900-01; OS10T0530900-01; OS10G0530900.
GeneIDi4349207.
GrameneiOS10T0530900-01; OS10T0530900-01; OS10G0530900.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10861 mRNA. Translation: BAA01632.1. Frameshift.
AF309376 mRNA. Translation: AAG32469.1.
AC113948 Genomic DNA. Translation: AAM94535.1.
DP000086 Genomic DNA. Translation: AAP54769.1.
AP008216 Genomic DNA. Translation: BAF27055.1.
AP014966 Genomic DNA. Translation: BAT11780.1.
AK059760 mRNA. Translation: BAG87108.1.
AK103699 mRNA. Translation: BAG96210.1.
RefSeqiXP_015614356.1. XM_015758870.1.
UniGeneiOs.4762.

3D structure databases

ProteinModelPortaliQ06398.
SMRiQ06398. Positions 5-225.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os10g38740.1.

Proteomic databases

PaxDbiQ06398.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS10T0530900-01; OS10T0530900-01; OS10G0530900.
GeneIDi4349207.
GrameneiOS10T0530900-01; OS10T0530900-01; OS10G0530900.

Phylogenomic databases

eggNOGiKOG0406. Eukaryota.
ENOG410XSIX. LUCA.
HOGENOMiHOG000125749.
InParanoidiQ06398.
OMAiFRCANEE.
OrthoDBiEOG09360N01.

Gene expression databases

ExpressionAtlasiQ06398. baseline and differential.
GenevisibleiQ06398. OS.

Family and domain databases

Gene3Di1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProiIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF13417. GST_N_3. 1 hit.
[Graphical view]
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEiPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGSTU6_ORYSJ
AccessioniPrimary (citable) accession number: Q06398
Secondary accession number(s): B7E411, Q0IW60, Q9FUE6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 4, 2005
Last modified: September 7, 2016
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.