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Q06398 (GSTU6_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 88. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable glutathione S-transferase GSTU6

EC=2.5.1.18
Alternative name(s):
28 kDa cold-induced protein
Gene names
Name:GSTU6
Ordered Locus Names:Os10g0530900, LOC_Os10g38740
ORF Names:OSJNBb0038A07.2
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length236 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles.

Catalytic activity

RX + glutathione = HX + R-S-glutathione.

Tissue specificity

Expressed in seedling shoots and roots.

Induction

By cold stress.

Sequence similarities

Belongs to the GST superfamily. Tau family.

Contains 1 GST C-terminal domain.

Contains 1 GST N-terminal domain.

Sequence caution

The sequence BAA01632.1 differs from that shown. Reason: Frameshift at positions 66, 86, 100, 119 and 185.

Ontologies

Keywords
   Biological processStress response
   Molecular functionTransferase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processresponse to stress

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionglutathione transferase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 236236Probable glutathione S-transferase GSTU6
PRO_0000185870

Regions

Domain5 – 8480GST N-terminal
Domain94 – 228135GST C-terminal
Region68 – 692Glutathione binding By similarity

Sites

Binding site151Glutathione By similarity
Binding site421Glutathione By similarity
Binding site561Glutathione; via amide nitrogen and carbonyl oxygen By similarity

Experimental info

Sequence conflict651Missing in BAA01632. Ref.1
Sequence conflict83 – 886GAGGRP → RAGR in BAA01632. Ref.1
Sequence conflict99 – 1035AVARF → VL in BAA01632. Ref.1
Sequence conflict1181Missing in BAA01632. Ref.1
Sequence conflict1251T → M in BAA01632. Ref.1
Sequence conflict135 – 1439QAVAALETL → RRGGVETV in BAA01632. Ref.1
Sequence conflict158 – 1625GGDGV → ARRR in BAA01632. Ref.1
Sequence conflict1681V → VV in BAA01632. Ref.1
Sequence conflict1841Missing in BAA01632. Ref.1
Sequence conflict194 – 1952PA → SS in BAA01632. Ref.1
Sequence conflict203 – 21614FRATD…VVPDD → STHRLQCVDVPMT in BAA01632. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Q06398 [UniParc].

Last modified January 4, 2005. Version 2.
Checksum: 60A5299744CB1F6C

FASTA23625,656
        10         20         30         40         50         60 
MAGSGELKLL GVWSSPYAIR VRVVLNLKSL PYEYVEENLG DKSDLLLASN PVHKSVPVLL 

        70         80         90        100        110        120 
HAGRPVNESQ VIVQYIDEVW PGGAGGRPSV MPSDPYERAV ARFWAAYVDD KVRPAWLAIL 

       130        140        150        160        170        180 
FGSKTEEERA AAVAQAVAAL ETLEGAFGEC SKGKPFFGGD GVGFVDVVLG GYLGWFTAID 

       190        200        210        220        230 
KLIGRRLIDP ARTPALAAWE ERFRATDAAK GVVPDDADKL LEFRQTLLRW SASKAK 

« Hide

References

« Hide 'large scale' references
[1]"Molecular cloning and characterization of genes related to chilling tolerance in rice."
Binh L.T., Oono K.
Plant Physiol. 99:1146-1150(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Strain: cv. Nipponbare.
Tissue: Seedling.
[2]"Organisation and structural evolution of the rice glutathione S-transferase gene family."
Soranzo N., Sari Gorla M., Mizzi L., De Toma G., Frova C.
Mol. Genet. Genomics 271:511-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], NOMENCLATURE.
[3]"In-depth view of structure, activity, and evolution of rice chromosome 10."
Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H. expand/collapse author list , Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.
Science 300:1566-1569(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[4]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[5]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D10861 mRNA. Translation: BAA01632.1. Frameshift.
AF309376 mRNA. Translation: AAG32469.1.
AC113948 Genomic DNA. Translation: AAM94535.1.
DP000086 Genomic DNA. Translation: AAP54769.1.
AP008216 Genomic DNA. Translation: BAF27055.1.
RefSeqNP_001065141.1. NM_001071676.1.
UniGeneOs.4762.

3D structure databases

ProteinModelPortalQ06398.
SMRQ06398. Positions 5-225.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS10T0530900-01; OS10T0530900-01; OS10G0530900.
GeneID4349207.
KEGGosa:4349207.

Organism-specific databases

GrameneQ06398.

Phylogenomic databases

eggNOGNOG271594.
HOGENOMHOG000125749.
KOK00799.
OMAVKSEKRI.
ProtClustDBCLSN2698219.

Family and domain databases

Gene3D1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamPF13417. GST_N_3. 1 hit.
[Graphical view]
SUPFAMSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameGSTU6_ORYSJ
AccessionPrimary (citable) accession number: Q06398
Secondary accession number(s): Q0IW60, Q9FUE6
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 4, 2005
Last modified: April 16, 2014
This is version 88 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations