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Q06398

- GSTU6_ORYSJ

UniProt

Q06398 - GSTU6_ORYSJ

Protein

Probable glutathione S-transferase GSTU6

Gene

GSTU6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 91 (01 Oct 2014)
      Sequence version 2 (04 Jan 2005)
      Previous versions | rss
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    Functioni

    Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles.

    Catalytic activityi

    RX + glutathione = HX + R-S-glutathione.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei15 – 151GlutathioneBy similarity
    Binding sitei42 – 421GlutathioneBy similarity
    Binding sitei56 – 561Glutathione; via amide nitrogen and carbonyl oxygenBy similarity

    GO - Molecular functioni

    1. glutathione transferase activity Source: UniProtKB-EC

    GO - Biological processi

    1. response to stress Source: UniProtKB-KW

    Keywords - Molecular functioni

    Transferase

    Keywords - Biological processi

    Stress response

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable glutathione S-transferase GSTU6 (EC:2.5.1.18)
    Alternative name(s):
    28 kDa cold-induced protein
    Gene namesi
    Name:GSTU6
    Ordered Locus Names:Os10g0530900, LOC_Os10g38740
    ORF Names:OSJNBb0038A07.2
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 10

    Organism-specific databases

    GrameneiQ06398.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 236236Probable glutathione S-transferase GSTU6PRO_0000185870Add
    BLAST

    Expressioni

    Tissue specificityi

    Expressed in seedling shoots and roots.

    Inductioni

    By cold stress.

    Structurei

    3D structure databases

    ProteinModelPortaliQ06398.
    SMRiQ06398. Positions 5-225.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini5 – 8480GST N-terminalAdd
    BLAST
    Domaini94 – 228135GST C-terminalAdd
    BLAST

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni68 – 692Glutathione bindingBy similarity

    Sequence similaritiesi

    Belongs to the GST superfamily. Tau family.Curated
    Contains 1 GST C-terminal domain.Curated
    Contains 1 GST N-terminal domain.Curated

    Phylogenomic databases

    eggNOGiNOG271594.
    HOGENOMiHOG000125749.
    KOiK00799.
    OMAiNESQVIV.

    Family and domain databases

    Gene3Di1.20.1050.10. 1 hit.
    3.40.30.10. 1 hit.
    InterProiIPR010987. Glutathione-S-Trfase_C-like.
    IPR004045. Glutathione_S-Trfase_N.
    IPR012336. Thioredoxin-like_fold.
    [Graphical view]
    PfamiPF13417. GST_N_3. 1 hit.
    [Graphical view]
    SUPFAMiSSF47616. SSF47616. 1 hit.
    SSF52833. SSF52833. 1 hit.
    PROSITEiPS50405. GST_CTER. 1 hit.
    PS50404. GST_NTER. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q06398-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGSGELKLL GVWSSPYAIR VRVVLNLKSL PYEYVEENLG DKSDLLLASN    50
    PVHKSVPVLL HAGRPVNESQ VIVQYIDEVW PGGAGGRPSV MPSDPYERAV 100
    ARFWAAYVDD KVRPAWLAIL FGSKTEEERA AAVAQAVAAL ETLEGAFGEC 150
    SKGKPFFGGD GVGFVDVVLG GYLGWFTAID KLIGRRLIDP ARTPALAAWE 200
    ERFRATDAAK GVVPDDADKL LEFRQTLLRW SASKAK 236
    Length:236
    Mass (Da):25,656
    Last modified:January 4, 2005 - v2
    Checksum:i60A5299744CB1F6C
    GO

    Sequence cautioni

    The sequence BAA01632.1 differs from that shown. Reason: Frameshift at positions 66, 86, 100, 119 and 185.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti65 – 651Missing in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti83 – 886GAGGRP → RAGR in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti99 – 1035AVARF → VL in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti118 – 1181Missing in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti125 – 1251T → M in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti135 – 1439QAVAALETL → RRGGVETV in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti158 – 1625GGDGV → ARRR in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti168 – 1681V → VV in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti184 – 1841Missing in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti194 – 1952PA → SS in BAA01632. (PubMed:16668981)Curated
    Sequence conflicti203 – 21614FRATD…VVPDD → STHRLQCVDVPMT in BAA01632. (PubMed:16668981)CuratedAdd
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D10861 mRNA. Translation: BAA01632.1. Frameshift.
    AF309376 mRNA. Translation: AAG32469.1.
    AC113948 Genomic DNA. Translation: AAM94535.1.
    DP000086 Genomic DNA. Translation: AAP54769.1.
    AP008216 Genomic DNA. Translation: BAF27055.1.
    RefSeqiNP_001065141.1. NM_001071676.1.
    UniGeneiOs.4762.

    Genome annotation databases

    EnsemblPlantsiOS10T0530900-01; OS10T0530900-01; OS10G0530900.
    GeneIDi4349207.
    KEGGiosa:4349207.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D10861 mRNA. Translation: BAA01632.1 . Frameshift.
    AF309376 mRNA. Translation: AAG32469.1 .
    AC113948 Genomic DNA. Translation: AAM94535.1 .
    DP000086 Genomic DNA. Translation: AAP54769.1 .
    AP008216 Genomic DNA. Translation: BAF27055.1 .
    RefSeqi NP_001065141.1. NM_001071676.1.
    UniGenei Os.4762.

    3D structure databases

    ProteinModelPortali Q06398.
    SMRi Q06398. Positions 5-225.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS10T0530900-01 ; OS10T0530900-01 ; OS10G0530900 .
    GeneIDi 4349207.
    KEGGi osa:4349207.

    Organism-specific databases

    Gramenei Q06398.

    Phylogenomic databases

    eggNOGi NOG271594.
    HOGENOMi HOG000125749.
    KOi K00799.
    OMAi NESQVIV.

    Family and domain databases

    Gene3Di 1.20.1050.10. 1 hit.
    3.40.30.10. 1 hit.
    InterProi IPR010987. Glutathione-S-Trfase_C-like.
    IPR004045. Glutathione_S-Trfase_N.
    IPR012336. Thioredoxin-like_fold.
    [Graphical view ]
    Pfami PF13417. GST_N_3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47616. SSF47616. 1 hit.
    SSF52833. SSF52833. 1 hit.
    PROSITEi PS50405. GST_CTER. 1 hit.
    PS50404. GST_NTER. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular cloning and characterization of genes related to chilling tolerance in rice."
      Binh L.T., Oono K.
      Plant Physiol. 99:1146-1150(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: cv. Nipponbare.
      Tissue: Seedling.
    2. "Organisation and structural evolution of the rice glutathione S-transferase gene family."
      Soranzo N., Sari Gorla M., Mizzi L., De Toma G., Frova C.
      Mol. Genet. Genomics 271:511-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], NOMENCLATURE.
    3. "In-depth view of structure, activity, and evolution of rice chromosome 10."
      Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H.
      , Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.
      Science 300:1566-1569(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    5. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiGSTU6_ORYSJ
    AccessioniPrimary (citable) accession number: Q06398
    Secondary accession number(s): Q0IW60, Q9FUE6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1995
    Last sequence update: January 4, 2005
    Last modified: October 1, 2014
    This is version 91 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3