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Q06398

- GSTU6_ORYSJ

UniProt

Q06398 - GSTU6_ORYSJ

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Protein

Probable glutathione S-transferase GSTU6

Gene

GSTU6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles.

Catalytic activityi

RX + glutathione = HX + R-S-glutathione.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei15 – 151GlutathioneBy similarity
Binding sitei42 – 421GlutathioneBy similarity
Binding sitei56 – 561Glutathione; via amide nitrogen and carbonyl oxygenBy similarity

GO - Molecular functioni

  1. glutathione transferase activity Source: UniProtKB-EC

GO - Biological processi

  1. response to stress Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Transferase

Keywords - Biological processi

Stress response

Names & Taxonomyi

Protein namesi
Recommended name:
Probable glutathione S-transferase GSTU6 (EC:2.5.1.18)
Alternative name(s):
28 kDa cold-induced protein
Gene namesi
Name:GSTU6
Ordered Locus Names:Os10g0530900, LOC_Os10g38740
ORF Names:OSJNBb0038A07.2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 10

Organism-specific databases

GrameneiQ06398.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 236236Probable glutathione S-transferase GSTU6PRO_0000185870Add
BLAST

Expressioni

Tissue specificityi

Expressed in seedling shoots and roots.

Inductioni

By cold stress.

Gene expression databases

ExpressionAtlasiQ06398. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ06398.
SMRiQ06398. Positions 5-225.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 8480GST N-terminalAdd
BLAST
Domaini94 – 228135GST C-terminalAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni68 – 692Glutathione bindingBy similarity

Sequence similaritiesi

Belongs to the GST superfamily. Tau family.Curated
Contains 1 GST C-terminal domain.Curated
Contains 1 GST N-terminal domain.Curated

Phylogenomic databases

eggNOGiNOG271594.
HOGENOMiHOG000125749.
InParanoidiQ06398.
KOiK00799.
OMAiNESQVIV.

Family and domain databases

Gene3Di1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProiIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF13417. GST_N_3. 1 hit.
[Graphical view]
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEiPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q06398-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAGSGELKLL GVWSSPYAIR VRVVLNLKSL PYEYVEENLG DKSDLLLASN
60 70 80 90 100
PVHKSVPVLL HAGRPVNESQ VIVQYIDEVW PGGAGGRPSV MPSDPYERAV
110 120 130 140 150
ARFWAAYVDD KVRPAWLAIL FGSKTEEERA AAVAQAVAAL ETLEGAFGEC
160 170 180 190 200
SKGKPFFGGD GVGFVDVVLG GYLGWFTAID KLIGRRLIDP ARTPALAAWE
210 220 230
ERFRATDAAK GVVPDDADKL LEFRQTLLRW SASKAK
Length:236
Mass (Da):25,656
Last modified:January 4, 2005 - v2
Checksum:i60A5299744CB1F6C
GO

Sequence cautioni

The sequence BAA01632.1 differs from that shown. Reason: Frameshift at positions 66, 86, 100, 119 and 185. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti65 – 651Missing in BAA01632. (PubMed:16668981)Curated
Sequence conflicti83 – 886GAGGRP → RAGR in BAA01632. (PubMed:16668981)Curated
Sequence conflicti99 – 1035AVARF → VL in BAA01632. (PubMed:16668981)Curated
Sequence conflicti118 – 1181Missing in BAA01632. (PubMed:16668981)Curated
Sequence conflicti125 – 1251T → M in BAA01632. (PubMed:16668981)Curated
Sequence conflicti135 – 1439QAVAALETL → RRGGVETV in BAA01632. (PubMed:16668981)Curated
Sequence conflicti158 – 1625GGDGV → ARRR in BAA01632. (PubMed:16668981)Curated
Sequence conflicti168 – 1681V → VV in BAA01632. (PubMed:16668981)Curated
Sequence conflicti184 – 1841Missing in BAA01632. (PubMed:16668981)Curated
Sequence conflicti194 – 1952PA → SS in BAA01632. (PubMed:16668981)Curated
Sequence conflicti203 – 21614FRATD…VVPDD → STHRLQCVDVPMT in BAA01632. (PubMed:16668981)CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10861 mRNA. Translation: BAA01632.1. Frameshift.
AF309376 mRNA. Translation: AAG32469.1.
AC113948 Genomic DNA. Translation: AAM94535.1.
DP000086 Genomic DNA. Translation: AAP54769.1.
AP008216 Genomic DNA. Translation: BAF27055.1.
RefSeqiNP_001065141.1. NM_001071676.1.
UniGeneiOs.4762.

Genome annotation databases

EnsemblPlantsiOS10T0530900-01; OS10T0530900-01; OS10G0530900.
GeneIDi4349207.
KEGGiosa:4349207.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10861 mRNA. Translation: BAA01632.1 . Frameshift.
AF309376 mRNA. Translation: AAG32469.1 .
AC113948 Genomic DNA. Translation: AAM94535.1 .
DP000086 Genomic DNA. Translation: AAP54769.1 .
AP008216 Genomic DNA. Translation: BAF27055.1 .
RefSeqi NP_001065141.1. NM_001071676.1.
UniGenei Os.4762.

3D structure databases

ProteinModelPortali Q06398.
SMRi Q06398. Positions 5-225.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS10T0530900-01 ; OS10T0530900-01 ; OS10G0530900 .
GeneIDi 4349207.
KEGGi osa:4349207.

Organism-specific databases

Gramenei Q06398.

Phylogenomic databases

eggNOGi NOG271594.
HOGENOMi HOG000125749.
InParanoidi Q06398.
KOi K00799.
OMAi NESQVIV.

Gene expression databases

ExpressionAtlasi Q06398. baseline.

Family and domain databases

Gene3Di 1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProi IPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR012336. Thioredoxin-like_fold.
[Graphical view ]
Pfami PF13417. GST_N_3. 1 hit.
[Graphical view ]
SUPFAMi SSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEi PS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning and characterization of genes related to chilling tolerance in rice."
    Binh L.T., Oono K.
    Plant Physiol. 99:1146-1150(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Nipponbare.
    Tissue: Seedling.
  2. "Organisation and structural evolution of the rice glutathione S-transferase gene family."
    Soranzo N., Sari Gorla M., Mizzi L., De Toma G., Frova C.
    Mol. Genet. Genomics 271:511-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], NOMENCLATURE.
  3. "In-depth view of structure, activity, and evolution of rice chromosome 10."
    Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H.
    , Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.
    Science 300:1566-1569(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiGSTU6_ORYSJ
AccessioniPrimary (citable) accession number: Q06398
Secondary accession number(s): Q0IW60, Q9FUE6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 4, 2005
Last modified: October 29, 2014
This is version 92 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3