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Protein

Probable glutathione S-transferase GSTU6

Gene

GSTU6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles.

Catalytic activityi

RX + glutathione = HX + R-S-glutathione.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei15GlutathioneBy similarity1
Binding sitei42GlutathioneBy similarity1
Binding sitei56Glutathione; via amide nitrogen and carbonyl oxygenBy similarity1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionTransferase
Biological processStress response

Names & Taxonomyi

Protein namesi
Recommended name:
Probable glutathione S-transferase GSTU6 (EC:2.5.1.18)
Alternative name(s):
28 kDa cold-induced protein
Gene namesi
Name:GSTU6
Ordered Locus Names:Os10g0530900, LOC_Os10g38740
ORF Names:OSJNBb0038A07.2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 10

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001858701 – 236Probable glutathione S-transferase GSTU6Add BLAST236

Proteomic databases

PaxDbiQ06398.

Expressioni

Tissue specificityi

Expressed in seedling shoots and roots.

Inductioni

By cold stress.

Gene expression databases

ExpressionAtlasiQ06398. baseline and differential.
GenevisibleiQ06398. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os10g38740.1.

Structurei

3D structure databases

ProteinModelPortaliQ06398.
SMRiQ06398.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 84GST N-terminalAdd BLAST80
Domaini94 – 228GST C-terminalAdd BLAST135

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni68 – 69Glutathione bindingBy similarity2

Sequence similaritiesi

Belongs to the GST superfamily. Tau family.Curated

Phylogenomic databases

eggNOGiKOG0406. Eukaryota.
ENOG410XSIX. LUCA.
HOGENOMiHOG000125749.
InParanoidiQ06398.
KOiK00799.
OMAiCDPWSDD.
OrthoDBiEOG09360N01.

Family and domain databases

InterProiView protein in InterPro
IPR010987. Glutathione-S-Trfase_C-like.
IPR036282. Glutathione-S-Trfase_C_sf.
IPR004045. Glutathione_S-Trfase_N.
IPR036249. Thioredoxin-like_sf.
PfamiView protein in Pfam
PF13417. GST_N_3. 1 hit.
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEiView protein in PROSITE
PS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.

Sequencei

Sequence statusi: Complete.

Q06398-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGSGELKLL GVWSSPYAIR VRVVLNLKSL PYEYVEENLG DKSDLLLASN
60 70 80 90 100
PVHKSVPVLL HAGRPVNESQ VIVQYIDEVW PGGAGGRPSV MPSDPYERAV
110 120 130 140 150
ARFWAAYVDD KVRPAWLAIL FGSKTEEERA AAVAQAVAAL ETLEGAFGEC
160 170 180 190 200
SKGKPFFGGD GVGFVDVVLG GYLGWFTAID KLIGRRLIDP ARTPALAAWE
210 220 230
ERFRATDAAK GVVPDDADKL LEFRQTLLRW SASKAK
Length:236
Mass (Da):25,656
Last modified:January 4, 2005 - v2
Checksum:i60A5299744CB1F6C
GO

Sequence cautioni

Q06398: The sequence BAA01632 differs from that shown. Reason: Frameshift at positions 66, 86, 100, 119 and 185.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti65Missing in BAA01632 (PubMed:16668981).Curated1
Sequence conflicti83 – 88GAGGRP → RAGR in BAA01632 (PubMed:16668981).Curated6
Sequence conflicti99 – 103AVARF → VL in BAA01632 (PubMed:16668981).Curated5
Sequence conflicti118Missing in BAA01632 (PubMed:16668981).Curated1
Sequence conflicti125T → M in BAA01632 (PubMed:16668981).Curated1
Sequence conflicti135 – 143QAVAALETL → RRGGVETV in BAA01632 (PubMed:16668981).Curated9
Sequence conflicti158 – 162GGDGV → ARRR in BAA01632 (PubMed:16668981).Curated5
Sequence conflicti168V → VV in BAA01632 (PubMed:16668981).Curated1
Sequence conflicti184Missing in BAA01632 (PubMed:16668981).Curated1
Sequence conflicti194 – 195PA → SS in BAA01632 (PubMed:16668981).Curated2
Sequence conflicti203 – 216FRATD…VVPDD → STHRLQCVDVPMT in BAA01632 (PubMed:16668981).CuratedAdd BLAST14

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10861 mRNA. Translation: BAA01632.1. Frameshift.
AF309376 mRNA. Translation: AAG32469.1.
AC113948 Genomic DNA. Translation: AAM94535.1.
DP000086 Genomic DNA. Translation: AAP54769.1.
AP008216 Genomic DNA. Translation: BAF27055.1.
AP014966 Genomic DNA. Translation: BAT11780.1.
AK059760 mRNA. Translation: BAG87108.1.
AK103699 mRNA. Translation: BAG96210.1.
RefSeqiXP_015614356.1. XM_015758870.1.
UniGeneiOs.4762.

Genome annotation databases

EnsemblPlantsiOS10T0530900-01; OS10T0530900-01; OS10G0530900.
GeneIDi4349207.
GrameneiOS10T0530900-01; OS10T0530900-01; OS10G0530900.
KEGGiosa:4349207.

Similar proteinsi

Entry informationi

Entry nameiGSTU6_ORYSJ
AccessioniPrimary (citable) accession number: Q06398
Secondary accession number(s): B7E411, Q0IW60, Q9FUE6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 4, 2005
Last modified: October 25, 2017
This is version 111 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families