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Protein

RNA polymerase sigma factor

Gene

whiG-Stv

Organism
Streptomyces griseocarneus
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:whiG-StvImported
OrganismiStreptomyces griseocarneusImported
Taxonomic identifieri51201 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces

Structurei

3D structure databases

ProteinModelPortaliQ06384.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini75 – 88RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini243 – 269RNA_pol_sigma70InterPro annotationAdd BLAST27

Sequence similaritiesi

Belongs to the sigma-70 factor family.UniRule annotationSAAS annotation

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR012845. RNA_pol_sigma_FliA_WhiG.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02479. FliA_WhiG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q06384-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPQHTSGSDR AAAPPAARGA ARPPAPSTLD ELWRSYKASG DERLREQLIL
60 70 80 90 100
HYSPLVKYVA GRVSVGLPPN VEQADFVSSG IFGLIDAIEK FDPARAIKFE
110 120 130 140 150
TYAITRIRGA MIDELRALDW IPRSVRQKAR AVERAYATLE AELRRTPTEA
160 170 180 190 200
EVAAEMGIAL EELHSVFSQL SLANVVALED LLHAGDEGGE RLSLMDTLED
210 220 230 240 250
TAADDPVEVA EDHELRRLLA RAINTLPERE KTVVTLYYYE GLTLAEIGQV
260 270
LGVTESRVSQ IHTKSVLQLR AKLADVGR
Length:278
Mass (Da):30,591
Last modified:November 1, 1996 - v1
Checksum:iC532D40C25C60C07
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X68709 Genomic DNA. Translation: CAA48660.1.
PIRiS29615.

Similar proteinsi

Entry informationi

Entry nameiQ06384_9ACTN
AccessioniPrimary (citable) accession number: Q06384
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: September 27, 2017
This is version 82 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)