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Protein

Transposase for insertion sequence element IS1001

Gene

tnpA

Organism
Bordetella parapertussis
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Involved in the transposition of the insertion sequence.

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. transposase activity Source: InterPro

GO - Biological processi

  1. transposition, DNA-mediated Source: InterPro
Complete GO annotation...

Keywords - Biological processi

DNA recombination, Transposition

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Transposase for insertion sequence element IS1001
Gene namesi
Name:tnpA
OrganismiBordetella parapertussis
Taxonomic identifieri519 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 406406Transposase for insertion sequence element IS1001PRO_0000075451Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the transposase 12 family.Curated

Phylogenomic databases

eggNOGiCOG3464.

Family and domain databases

InterProiIPR002560. Transposase.
IPR029261. Transposase_zf.
[Graphical view]
PfamiPF01610. DDE_Tnp_ISL3. 1 hit.
PF14690. zf-ISL3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q06126-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MLDRKLMESL GGWQGYGVER VEWPEDPGRT LSIYLKPTAK VMLCEQCGAR
60 70 80 90 100
CRQVHETTVR RVRDLPIFEY RVVLHVPRRR LWCEQCGGPR LERLAWLGRY
110 120 130 140 150
QRVTDRLAQA CSQLLQSSNV QAVARFFELG WHTVKTLDKA RLRASVREPD
160 170 180 190 200
WSKIEYLAMD EFALHKGHRY ATVVVDPIGR QVLWIGPGRS RETARAFFEQ
210 220 230 240 250
LPPGAAQRIK AVAIDMTTAY ELEIQAHSPQ AEIVYDLFHV VAKYGREVID
260 270 280 290 300
RVRVDQANQL RQDRPARRII KSSRWLLLRN RDNLDRQQAV RLDELLQANQ
310 320 330 340 350
PLLTVYVLRD ELKRLWFYQR PAWARQAWNH WYEQAEQSGI AALNTFAQRL
360 370 380 390 400
KGYLHGILAR CRHPLNTSIV EGINNTIKVI KRRAYGYRDQ EYFFLKIRAA

FPGNAR
Length:406
Mass (Da):47,527
Last modified:June 1, 1994 - v1
Checksum:i0445CDFD22716A5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66858 Genomic DNA. Translation: CAA47326.1.
PIRiA40629.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66858 Genomic DNA. Translation: CAA47326.1.
PIRiA40629.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiCOG3464.

Family and domain databases

InterProiIPR002560. Transposase.
IPR029261. Transposase_zf.
[Graphical view]
PfamiPF01610. DDE_Tnp_ISL3. 1 hit.
PF14690. zf-ISL3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Characterization of IS1001, an insertion sequence element of Bordetella parapertussis."
    van der Zee A., Agterberg C., van Agterveld M., Peeters M., Mooi F.R.
    J. Bacteriol. 175:141-147(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiTNPA_BORPP
AccessioniPrimary (citable) accession number: Q06126
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: October 1, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Transposable element

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.