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Protein

DNA-binding protein APE_1087b

Gene

APE_1087b

Organism
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciAPER272557:GJD6-770-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-binding protein APE_1087bUniRule annotation
Gene namesi
Ordered Locus Names:APE_1087b
OrganismiAeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Taxonomic identifieri272557 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiDesulfurococcalesDesulfurococcaceaeAeropyrum
Proteomesi
  • UP000002518 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 115115DNA-binding protein APE_1087bPRO_0000284558Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272557.APE_1087b.

Structurei

3D structure databases

ProteinModelPortaliQ05E29.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PDCD5 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04179. Archaea.
COG2118. LUCA.
HOGENOMiHOG000194121.
KOiK06875.
OMAiIREPIDD.

Family and domain databases

Gene3Di1.10.8.140. 1 hit.
HAMAPiMF_00026. dsDNA_bind.
InterProiIPR022889. DNA_bind_arc.
IPR002836. PDCD5-related.
[Graphical view]
PfamiPF01984. dsDNA_bind. 1 hit.
[Graphical view]
PIRSFiPIRSF015730. TFAR19. 1 hit.
SUPFAMiSSF46950. SSF46950. 1 hit.

Sequencei

Sequence statusi: Complete.

Q05E29-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYEYDDELE EIRRRKMLEL QRRLEEERRR EEEQARLRAQ KDAILRRLLT
60 70 80 90 100
SKARERLANL RLVRPEIAEA AENAVIQLVQ TGRITPPVDD DTLVQILLEL
110
DRSTRRDFEI RIKRK
Length:115
Mass (Da):13,910
Last modified:November 14, 2006 - v1
Checksum:i3B991983D42C2EC2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000002 Genomic DNA. Translation: BAF34772.1.

Genome annotation databases

EnsemblBacteriaiBAF34772; BAF34772; APE_1087b.
KEGGiape:APE_1087b.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000002 Genomic DNA. Translation: BAF34772.1.

3D structure databases

ProteinModelPortaliQ05E29.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272557.APE_1087b.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAF34772; BAF34772; APE_1087b.
KEGGiape:APE_1087b.

Phylogenomic databases

eggNOGiarCOG04179. Archaea.
COG2118. LUCA.
HOGENOMiHOG000194121.
KOiK06875.
OMAiIREPIDD.

Enzyme and pathway databases

BioCyciAPER272557:GJD6-770-MONOMER.

Family and domain databases

Gene3Di1.10.8.140. 1 hit.
HAMAPiMF_00026. dsDNA_bind.
InterProiIPR022889. DNA_bind_arc.
IPR002836. PDCD5-related.
[Graphical view]
PfamiPF01984. dsDNA_bind. 1 hit.
[Graphical view]
PIRSFiPIRSF015730. TFAR19. 1 hit.
SUPFAMiSSF46950. SSF46950. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1.

Entry informationi

Entry nameiY1087_AERPE
AccessioniPrimary (citable) accession number: Q05E29
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: November 14, 2006
Last modified: November 11, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.